Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03119

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
3,472,138	+		MIT1002_03117	0.41	-1.4
3,472,143	+		MIT1002_03117	0.42	-1.9
3,472,143	+		MIT1002_03117	0.42	-2.4
3,472,146	-		MIT1002_03117	0.43	-2.1
3,472,229	-		MIT1002_03117	0.57	-0.4
3,472,262	+		MIT1002_03117	0.62	-0.9
3,472,270	-		MIT1002_03117	0.63	-0.9
3,472,566	+				+0.5
3,472,566	+				-0.3
3,472,566	+				-2.6
3,472,567	-				+0.8
3,472,567	-				-1.2
3,472,567	-				-0.9
3,472,567	-				+1.1
3,472,567	-				-1.3
3,472,623	+		MIT1002_03118	0.19	-0.0
3,472,631	-		MIT1002_03118	0.21	-0.2
3,472,724	-		MIT1002_03118	0.37	-2.3
3,472,730	+		MIT1002_03118	0.38	-2.1
3,472,740	+		MIT1002_03118	0.40	-1.5
3,472,748	-		MIT1002_03118	0.41	-0.4
3,472,753	-		MIT1002_03118	0.42	-0.0
3,472,775	+		MIT1002_03118	0.46	+0.4
3,472,790	+		MIT1002_03118	0.48	+0.2
3,472,811	-		MIT1002_03118	0.52	-0.3
3,472,863	+		MIT1002_03118	0.61	+0.7
3,472,863	+		MIT1002_03118	0.61	-0.5
3,472,893	-		MIT1002_03118	0.66	-0.7
3,472,948	+		MIT1002_03118	0.76	-0.2
3,472,948	+		MIT1002_03118	0.76	-0.2
3,472,948	+		MIT1002_03118	0.76	-0.2
3,473,068	-				-0.1
3,473,088	-				+0.1
3,473,098	-				-0.1
3,473,098	-				+0.4
3,473,197	+				+0.5
3,473,334	+		MIT1002_03119	0.15	+0.1
3,473,350	+		MIT1002_03119	0.16	+0.7
3,473,399	-		MIT1002_03119	0.20	+3.8
3,473,399	-		MIT1002_03119	0.20	-0.5
3,473,433	-		MIT1002_03119	0.22	-1.0
3,473,483	+		MIT1002_03119	0.26	-0.4
3,473,501	-		MIT1002_03119	0.27	+0.2
3,473,501	-		MIT1002_03119	0.27	+0.2
3,473,516	-		MIT1002_03119	0.29	+1.1
3,473,523	-		MIT1002_03119	0.29	-3.4
3,473,528	-		MIT1002_03119	0.29	-0.6
3,473,528	-		MIT1002_03119	0.29	-2.1
3,473,585	+		MIT1002_03119	0.34	+0.2
3,473,593	-		MIT1002_03119	0.34	-1.5
3,473,593	-		MIT1002_03119	0.34	-0.9
3,473,600	+		MIT1002_03119	0.35	+0.1
3,473,618	-		MIT1002_03119	0.36	-1.5
3,473,775	-		MIT1002_03119	0.48	+0.2
3,473,857	+		MIT1002_03119	0.54	-0.1
3,473,857	+		MIT1002_03119	0.54	+0.5
3,473,865	-		MIT1002_03119	0.54	+1.2
3,473,865	-		MIT1002_03119	0.54	-0.1
3,473,895	-		MIT1002_03119	0.56	-1.1
3,473,933	+		MIT1002_03119	0.59	-0.5
3,473,955	+		MIT1002_03119	0.61	-1.2
3,473,970	+		MIT1002_03119	0.62	-0.4
3,473,978	-		MIT1002_03119	0.62	-0.3
3,474,072	+		MIT1002_03119	0.69	-0.2
3,474,182	-		MIT1002_03119	0.77	-1.4
3,474,198	+		MIT1002_03119	0.79	+1.0
3,474,217	-		MIT1002_03119	0.80	-1.4
3,474,280	+		MIT1002_03119	0.85	-0.3
3,474,288	-		MIT1002_03119	0.85	-2.3
3,474,366	-				+0.0
3,474,385	-				-0.9
3,474,401	-				+0.2
3,474,404	-				-1.4
3,474,414	+				-1.5
3,474,423	-				+0.8
3,474,491	-				-3.4
3,474,557	+				+0.5
3,474,560	+				+0.5
3,474,591	+				-1.1
3,474,633	-				-0.3
3,474,782	+		MIT1002_03120	0.28	+0.5
3,474,782	+		MIT1002_03120	0.28	-1.0
3,474,812	+		MIT1002_03120	0.33	-0.4
3,474,831	+		MIT1002_03120	0.36	+2.1
3,474,839	-		MIT1002_03120	0.38	+0.7
3,474,840	+		MIT1002_03120	0.38	-0.8
3,474,840	+		MIT1002_03120	0.38	-0.2
3,474,844	-		MIT1002_03120	0.39	-1.6
3,474,847	+		MIT1002_03120	0.39	-0.6
3,474,935	-		MIT1002_03120	0.54	+0.4
3,474,935	-		MIT1002_03120	0.54	+1.0
3,474,950	-		MIT1002_03120	0.56	+0.4
3,474,963	+		MIT1002_03120	0.58	+0.2
3,474,996	-		MIT1002_03120	0.64	-0.8
3,475,022	+		MIT1002_03120	0.68	-1.1
3,475,037	+		MIT1002_03120	0.71	-0.5
3,475,055	-		MIT1002_03120	0.74	+0.3
3,475,069	+		MIT1002_03120	0.76	+0.0
3,475,069	+		MIT1002_03120	0.76	-0.6
3,475,069	+		MIT1002_03120	0.76	+0.7
3,475,069	+		MIT1002_03120	0.76	-0.2
3,475,069	+		MIT1002_03120	0.76	-0.5
3,475,069	+		MIT1002_03120	0.76	-0.6
3,475,077	-		MIT1002_03120	0.78	-0.2
3,475,077	-		MIT1002_03120	0.78	-1.3
3,475,077	-		MIT1002_03120	0.78	+0.5
3,475,077	-		MIT1002_03120	0.78	+0.4
3,475,151	+				+1.2
3,475,159	-				-1.2
3,475,159	-				+0.3
3,475,159	-				-0.2
3,475,173	+				-0.6
3,475,173	+				+0.0
3,475,181	-				+0.7
3,475,204	-				-2.3
3,475,293	-		MIT1002_03121	0.16	-1.7
3,475,344	+		MIT1002_03121	0.32	-0.8
3,475,365	+		MIT1002_03121	0.38	-0.0
3,475,448	-		MIT1002_03121	0.63	-1.3