Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03088

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
3,442,470	-		MIT1002_03087	0.65	-2.0
3,442,529	+		MIT1002_03087	0.67	+1.1
3,442,529	+		MIT1002_03087	0.67	-0.8
3,442,547	-		MIT1002_03087	0.68	-0.2
3,442,547	-		MIT1002_03087	0.68	+0.5
3,442,547	-		MIT1002_03087	0.68	-0.7
3,442,617	+		MIT1002_03087	0.71	-0.2
3,442,617	-		MIT1002_03087	0.71	+0.6
3,442,644	+		MIT1002_03087	0.72	+0.9
3,442,663	+		MIT1002_03087	0.73	+0.1
3,442,680	+		MIT1002_03087	0.73	-1.6
3,442,706	-		MIT1002_03087	0.74	-1.0
3,442,722	+		MIT1002_03087	0.75	+0.4
3,442,754	-		MIT1002_03087	0.76	-0.3
3,442,756	+		MIT1002_03087	0.76	-0.8
3,442,756	+		MIT1002_03087	0.76	+0.8
3,442,804	-		MIT1002_03087	0.78	+2.6
3,442,836	-		MIT1002_03087	0.79	-3.4
3,442,855	+		MIT1002_03087	0.80	+1.6
3,442,863	-		MIT1002_03087	0.80	-2.0
3,442,879	-		MIT1002_03087	0.81	-2.4
3,442,928	+		MIT1002_03087	0.83	+0.7
3,442,928	-		MIT1002_03087	0.83	-1.7
3,442,930	+		MIT1002_03087	0.83	-1.3
3,442,936	-		MIT1002_03087	0.83	+0.4
3,442,936	-		MIT1002_03087	0.83	-0.7
3,442,941	+		MIT1002_03087	0.83	+0.6
3,442,949	-		MIT1002_03087	0.84	+6.4
3,442,971	-		MIT1002_03087	0.85	+0.2
3,442,982	+		MIT1002_03087	0.85	-0.0
3,443,031	+		MIT1002_03087	0.87	+0.4
3,443,031	+		MIT1002_03087	0.87	-1.7
3,443,031	+		MIT1002_03087	0.87	-0.8
3,443,031	+		MIT1002_03087	0.87	+0.5
3,443,031	+		MIT1002_03087	0.87	-0.4
3,443,039	-		MIT1002_03087	0.87	+0.4
3,443,039	-		MIT1002_03087	0.87	+1.1
3,443,082	+		MIT1002_03087	0.89	+0.8
3,443,098	+		MIT1002_03087	0.90	+0.1
3,443,100	-		MIT1002_03087	0.90	+0.9
3,443,147	+				-0.2
3,443,185	+				+0.3
3,443,206	-				+0.5
3,443,267	+				-1.0
3,443,323	-				-1.7
3,443,332	-				+1.5
3,443,332	-				+0.1
3,443,576	+		MIT1002_03088	0.15	-0.7
3,443,631	+		MIT1002_03088	0.21	-1.8
3,443,638	-		MIT1002_03088	0.22	-0.3
3,443,654	+		MIT1002_03088	0.24	-1.6
3,443,654	+		MIT1002_03088	0.24	+0.6
3,443,659	+		MIT1002_03088	0.24	-1.0
3,443,662	-		MIT1002_03088	0.25	+0.2
3,443,662	-		MIT1002_03088	0.25	-0.1
3,443,662	-		MIT1002_03088	0.25	-0.3
3,443,662	-		MIT1002_03088	0.25	-2.1
3,443,662	-		MIT1002_03088	0.25	-3.0
3,443,672	+		MIT1002_03088	0.26	+2.2
3,443,685	+		MIT1002_03088	0.27	+0.5
3,443,690	-		MIT1002_03088	0.28	+0.6
3,443,692	+		MIT1002_03088	0.28	-0.1
3,443,750	+		MIT1002_03088	0.35	+1.1
3,443,776	+		MIT1002_03088	0.38	-1.6
3,443,776	+		MIT1002_03088	0.38	-1.5
3,443,776	+		MIT1002_03088	0.38	+1.1
3,443,784	-		MIT1002_03088	0.39	+0.7
3,443,789	+		MIT1002_03088	0.39	-1.8
3,443,795	+		MIT1002_03088	0.40	-0.9
3,443,803	-		MIT1002_03088	0.41	-0.3
3,443,873	+		MIT1002_03088	0.49	+1.4
3,443,874	-		MIT1002_03088	0.49	+0.1
3,443,902	+		MIT1002_03088	0.52	+0.1
3,443,903	+		MIT1002_03088	0.52	+0.3
3,443,957	+		MIT1002_03088	0.58	-0.3
3,443,977	+		MIT1002_03088	0.61	+0.4
3,443,990	+		MIT1002_03088	0.62	-1.0
3,443,997	+		MIT1002_03088	0.63	-0.2
3,444,020	+		MIT1002_03088	0.66	-0.5
3,444,081	+		MIT1002_03088	0.72	+0.9
3,444,108	-		MIT1002_03088	0.76	-2.0
3,444,151	+		MIT1002_03088	0.80	+2.5
3,444,153	+		MIT1002_03088	0.81	+1.7
3,444,159	-		MIT1002_03088	0.81	+0.4
3,444,163	+		MIT1002_03088	0.82	+0.1
3,444,205	-		MIT1002_03088	0.87	-0.3
3,444,328	-				+0.8
3,444,344	-				+0.4
3,444,348	+				+1.9
3,444,348	+				-1.2
3,444,348	+				+0.4
3,444,348	+				+0.2
3,444,348	+				-2.4
3,444,356	-				-0.3
3,444,356	-				-0.7
3,444,356	-				+0.3
3,444,356	-				+0.7
3,444,356	-				-0.6
3,444,356	-				+0.9
3,444,356	-				+0.7
3,444,361	-				-2.0
3,444,582	-				-0.2
3,444,615	+				-1.5
3,444,623	-				-0.1
3,444,674	-		MIT1002_03089	0.14	-0.3
3,444,675	+		MIT1002_03089	0.14	-1.2
3,444,675	+		MIT1002_03089	0.14	+0.3
3,444,678	-		MIT1002_03089	0.14	-0.2
3,444,694	+		MIT1002_03089	0.16	+0.3
3,444,702	-		MIT1002_03089	0.16	-2.1
3,444,702	-		MIT1002_03089	0.16	+0.1
3,444,721	-		MIT1002_03089	0.18	+0.6
3,444,723	+		MIT1002_03089	0.18	-0.8
3,444,736	-		MIT1002_03089	0.19	-1.2
3,444,773	+		MIT1002_03089	0.23	+0.3
3,444,773	+		MIT1002_03089	0.23	+2.2
3,444,773	+		MIT1002_03089	0.23	-1.2
3,444,781	-		MIT1002_03089	0.23	+0.3
3,444,781	-		MIT1002_03089	0.23	-0.5
3,444,781	-		MIT1002_03089	0.23	-0.8
3,444,781	-		MIT1002_03089	0.23	+0.4
3,444,783	+		MIT1002_03089	0.23	-0.1
3,444,783	+		MIT1002_03089	0.23	-1.8
3,444,783	+		MIT1002_03089	0.23	-0.7
3,444,791	-		MIT1002_03089	0.24	+0.9
3,444,809	+		MIT1002_03089	0.26	-1.0
3,444,810	-		MIT1002_03089	0.26	-1.0
3,444,888	-		MIT1002_03089	0.32	-0.2
3,444,893	+		MIT1002_03089	0.33	-0.0
3,444,907	-		MIT1002_03089	0.34	+0.8
3,444,982	+		MIT1002_03089	0.41	-1.0
3,445,048	-		MIT1002_03089	0.46	-0.4
3,445,095	-		MIT1002_03089	0.50	-0.3
3,445,138	+		MIT1002_03089	0.54	-2.4
3,445,248	-		MIT1002_03089	0.64	-0.6
3,445,292	-		MIT1002_03089	0.67	-0.1