Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02829

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
3,133,641	+				-0.4
3,133,641	+				-0.3
3,133,649	-				+0.4
3,133,754	-		MIT1002_02828	0.20	-1.0
3,133,811	+		MIT1002_02828	0.27	-0.4
3,133,883	+		MIT1002_02828	0.34	-0.2
3,134,024	+		MIT1002_02828	0.50	-0.6
3,134,034	+		MIT1002_02828	0.51	+0.4
3,134,063	-		MIT1002_02828	0.54	-1.2
3,134,094	-		MIT1002_02828	0.57	-1.4
3,134,094	-		MIT1002_02828	0.57	+2.4
3,134,186	+		MIT1002_02828	0.67	+1.4
3,134,194	-		MIT1002_02828	0.68	-2.0
3,134,194	-		MIT1002_02828	0.68	-2.6
3,134,216	+		MIT1002_02828	0.71	+0.7
3,134,223	+		MIT1002_02828	0.71	-0.4
3,134,263	-		MIT1002_02828	0.76	+0.6
3,134,272	+		MIT1002_02828	0.77	-1.5
3,134,378	+		MIT1002_02828	0.88	-0.4
3,134,383	+		MIT1002_02828	0.89	-0.3
3,134,386	-		MIT1002_02828	0.89	+0.3
3,134,386	-		MIT1002_02828	0.89	-0.6
3,134,424	+				+1.2
3,134,433	-				-0.4
3,134,509	-				-0.5
3,134,616	+				+0.5
3,134,802	+		MIT1002_02829	0.15	-1.8
3,134,802	+		MIT1002_02829	0.15	-1.1
3,134,824	+		MIT1002_02829	0.17	-0.5
3,134,832	-		MIT1002_02829	0.17	-1.7
3,134,832	-		MIT1002_02829	0.17	+0.7
3,134,893	-		MIT1002_02829	0.21	-2.0
3,134,902	+		MIT1002_02829	0.22	-0.6
3,134,932	-		MIT1002_02829	0.24	-1.0
3,134,932	-		MIT1002_02829	0.24	-2.1
3,135,080	-		MIT1002_02829	0.34	-0.4
3,135,117	+		MIT1002_02829	0.37	-2.0
3,135,272	+		MIT1002_02829	0.47	-1.5
3,135,280	-		MIT1002_02829	0.48	+0.8
3,135,287	+		MIT1002_02829	0.48	-0.2
3,135,336	-		MIT1002_02829	0.51	-0.2
3,135,349	-		MIT1002_02829	0.52	+0.1
3,135,437	-		MIT1002_02829	0.58	-0.2
3,135,483	+		MIT1002_02829	0.61	-1.1
3,135,513	-		MIT1002_02829	0.63	-1.0
3,135,640	+		MIT1002_02829	0.72	+1.9
3,135,640	+		MIT1002_02829	0.72	-1.1
3,135,648	-		MIT1002_02829	0.72	+1.7
3,135,657	+		MIT1002_02829	0.73	+0.2
3,135,657	+		MIT1002_02829	0.73	+0.1
3,135,665	-		MIT1002_02829	0.74	+1.7
3,135,724	-		MIT1002_02829	0.78	-1.5
3,135,784	+		MIT1002_02829	0.82	-0.7
3,135,784	+		MIT1002_02829	0.82	-2.4
3,135,852	-		MIT1002_02829	0.86	-0.3
3,135,887	-		MIT1002_02829	0.89	-0.4
3,135,887	-		MIT1002_02829	0.89	-0.4
3,135,890	+		MIT1002_02829	0.89	-1.5
3,135,934	+				+0.8
3,135,934	+				+1.9
3,135,942	-				-1.0
3,135,942	-				+0.6
3,135,963	-				-0.5
3,136,020	+				+4.7
3,136,020	+				+1.1
3,136,028	-				+1.2
3,136,028	-				-0.9
3,136,028	-				+0.4
3,136,028	-				+0.9
3,136,028	-				-1.0
3,136,061	-				+0.0
3,136,063	+				-0.2
3,136,086	-				+0.3
3,136,088	+				-0.6
3,136,088	+				-0.5
3,136,146	+				+2.1
3,136,154	-				-0.1
3,136,161	-				+0.0
3,136,181	+				-1.2
3,136,181	+				+0.6
3,136,189	-				+0.2
3,136,189	-				+1.3
3,136,189	-				+2.0
3,136,189	-				-0.7
3,136,302	+				-2.1
3,136,302	+				-0.9
3,136,310	-				+1.2
3,136,325	-				-0.1
3,136,333	-				-1.6
3,136,338	+				+0.0
3,136,464	+		MIT1002_02830	0.18	-0.5
3,136,474	+		MIT1002_02830	0.19	-0.7
3,136,474	+		MIT1002_02830	0.19	+0.1
3,136,474	+		MIT1002_02830	0.19	+0.4
3,136,474	+		MIT1002_02830	0.19	-1.7
3,136,482	-		MIT1002_02830	0.20	+0.2
3,136,482	-		MIT1002_02830	0.20	-1.1
3,136,494	-		MIT1002_02830	0.21	-0.6
3,136,494	-		MIT1002_02830	0.21	+1.4
3,136,499	-		MIT1002_02830	0.22	-1.1
3,136,599	+		MIT1002_02830	0.32	+0.4
3,136,599	+		MIT1002_02830	0.32	-0.4
3,136,599	+		MIT1002_02830	0.32	+3.0
3,136,633	+		MIT1002_02830	0.36	-0.5
3,136,633	+		MIT1002_02830	0.36	-0.9
3,136,633	+		MIT1002_02830	0.36	-0.6
3,136,633	+		MIT1002_02830	0.36	+0.7
3,136,633	+		MIT1002_02830	0.36	-1.5
3,136,641	-		MIT1002_02830	0.37	-0.5
3,136,641	-		MIT1002_02830	0.37	-0.4
3,136,641	-		MIT1002_02830	0.37	+0.0
3,136,641	-		MIT1002_02830	0.37	-0.6
3,136,641	-		MIT1002_02830	0.37	+0.1
3,136,665	+		MIT1002_02830	0.39	+1.3
3,136,665	+		MIT1002_02830	0.39	+0.6
3,136,834	-		MIT1002_02830	0.57	-2.2