Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01884

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
2,095,939	+		MIT1002_01883	0.36	-0.6
2,095,939	+		MIT1002_01883	0.36	+0.3
2,095,947	-		MIT1002_01883	0.37	-1.2
2,095,953	+		MIT1002_01883	0.37	+0.8
2,095,953	+		MIT1002_01883	0.37	+1.3
2,095,953	+		MIT1002_01883	0.37	+0.2
2,096,120	+		MIT1002_01883	0.48	+2.8
2,096,154	-		MIT1002_01883	0.50	+0.2
2,096,159	+		MIT1002_01883	0.51	+1.0
2,096,178	+		MIT1002_01883	0.52	-1.4
2,096,186	+		MIT1002_01883	0.52	+0.9
2,096,194	-		MIT1002_01883	0.53	-1.3
2,096,194	-		MIT1002_01883	0.53	-0.0
2,096,236	+		MIT1002_01883	0.56	+1.8
2,096,302	+		MIT1002_01883	0.60	+1.2
2,096,412	+		MIT1002_01883	0.67	-0.3
2,096,509	+		MIT1002_01883	0.74	-2.8
2,096,526	+		MIT1002_01883	0.75	+1.1
2,096,560	-		MIT1002_01883	0.77	-1.0
2,096,861	-				-2.1
2,096,961	+				+0.1
2,096,964	-				+0.5
2,097,010	-				+0.8
2,097,072	+		MIT1002_01884	0.13	+0.3
2,097,087	-		MIT1002_01884	0.15	+0.5
2,097,211	+		MIT1002_01884	0.26	-0.5
2,097,228	-		MIT1002_01884	0.27	-1.0
2,097,409	+		MIT1002_01884	0.44	+0.8
2,097,427	-		MIT1002_01884	0.45	+1.2
2,097,434	-		MIT1002_01884	0.46	-0.4
2,097,441	-		MIT1002_01884	0.47	-0.4
2,097,542	-		MIT1002_01884	0.56	+0.1
2,097,578	-		MIT1002_01884	0.59	-1.0
2,097,602	+		MIT1002_01884	0.61	-1.1
2,097,689	-		MIT1002_01884	0.69	-5.5
2,097,755	-		MIT1002_01884	0.75	-1.0
2,097,755	-		MIT1002_01884	0.75	-1.6
2,097,799	+		MIT1002_01884	0.79	-1.4
2,097,805	+		MIT1002_01884	0.79	-0.6
2,097,840	+		MIT1002_01884	0.83	-0.7
2,097,865	-		MIT1002_01884	0.85	-2.4
2,097,881	+		MIT1002_01884	0.86	+0.0
2,097,881	+		MIT1002_01884	0.86	+0.3
2,097,881	+		MIT1002_01884	0.86	+0.0
2,097,881	+		MIT1002_01884	0.86	+1.9
2,097,889	-		MIT1002_01884	0.87	-3.1
2,098,000	+				-0.5
2,098,113	+				-2.8
2,098,205	+		MIT1002_01885	0.14	-3.8
2,098,329	+		MIT1002_01885	0.24	-3.0
2,098,329	+		MIT1002_01885	0.24	-2.3
2,098,367	+		MIT1002_01885	0.27	-2.7
2,098,375	-		MIT1002_01885	0.28	-3.3
2,098,408	-		MIT1002_01885	0.30	-2.3
2,098,408	-		MIT1002_01885	0.30	-1.7
2,098,489	-		MIT1002_01885	0.37	-4.5
2,098,553	-		MIT1002_01885	0.42	-0.8
2,098,591	+		MIT1002_01885	0.45	-2.0
2,098,592	-		MIT1002_01885	0.45	-6.0
2,098,686	+		MIT1002_01885	0.53	-2.0
2,098,702	-		MIT1002_01885	0.54	-0.8
2,098,702	-		MIT1002_01885	0.54	-1.9
2,098,720	-		MIT1002_01885	0.55	-1.2
2,098,780	+		MIT1002_01885	0.60	-2.7
2,098,790	+		MIT1002_01885	0.61	-2.3
2,098,790	+		MIT1002_01885	0.61	-4.0
2,098,807	+		MIT1002_01885	0.62	-5.1
2,098,812	+		MIT1002_01885	0.63	-2.6
2,098,815	-		MIT1002_01885	0.63	-1.4
2,098,820	-		MIT1002_01885	0.63	-3.7
2,098,884	-		MIT1002_01885	0.69	-0.7
2,098,921	+		MIT1002_01885	0.71	-2.8
2,098,982	+		MIT1002_01885	0.76	-2.1
2,099,027	+		MIT1002_01885	0.80	-2.6