Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01882

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
2,093,008	+		MIT1002_01881	0.35	+0.9
2,093,016	-		MIT1002_01881	0.36	+0.8
2,093,121	+		MIT1002_01881	0.54	-0.2
2,093,236	+		MIT1002_01881	0.73	+1.0
2,093,236	+		MIT1002_01881	0.73	+1.3
2,093,432	-				+1.1
2,093,457	+				+1.0
2,093,459	+				-0.6
2,093,459	+				-0.5
2,093,467	-				-1.2
2,093,467	-				-1.0
2,093,483	+				-0.8
2,093,491	-				-0.3
2,093,495	+				-0.5
2,093,495	+				+0.0
2,093,503	-				+0.4
2,093,503	-				+1.2
2,093,516	-				+2.3
2,093,648	-				-0.1
2,093,691	-				+0.0
2,093,774	+				+0.1
2,093,799	+				+0.1
2,093,995	-				-1.2
2,094,005	+				-2.9
2,094,010	+				+2.1
2,094,013	-				+0.0
2,094,181	-		MIT1002_01882	0.19	+1.6
2,094,408	-		MIT1002_01882	0.41	-1.0
2,094,408	-		MIT1002_01882	0.41	-0.7
2,094,454	+		MIT1002_01882	0.45	-1.1
2,094,454	+		MIT1002_01882	0.45	-0.6
2,094,496	+		MIT1002_01882	0.49	-0.1
2,094,581	-		MIT1002_01882	0.57	-0.3
2,094,604	-		MIT1002_01882	0.60	+0.1
2,094,693	+		MIT1002_01882	0.68	-0.8
2,094,703	-		MIT1002_01882	0.69	+0.8
2,094,703	-		MIT1002_01882	0.69	-0.1
2,094,787	-		MIT1002_01882	0.77	+0.7
2,094,817	-		MIT1002_01882	0.80	-0.7
2,094,831	-		MIT1002_01882	0.81	+0.2
2,094,833	+		MIT1002_01882	0.82	-1.3
2,094,833	+		MIT1002_01882	0.82	-0.2
2,094,841	-		MIT1002_01882	0.82	-1.4
2,094,955	+				-0.6
2,095,444	+				+0.3
2,095,452	-				-1.0
2,095,511	+				+0.0
2,095,524	-				-0.1
2,095,535	+				-1.7
2,095,537	+				+1.1
2,095,543	-				-0.2
2,095,543	-				+0.2
2,095,543	-				-0.3
2,095,543	-				-0.1
2,095,546	+		MIT1002_01883	0.10	+2.0
2,095,642	-		MIT1002_01883	0.17	-1.1
2,095,677	-		MIT1002_01883	0.19	-0.7
2,095,803	+		MIT1002_01883	0.27	+0.0
2,095,811	-		MIT1002_01883	0.28	+0.3
2,095,811	-		MIT1002_01883	0.28	-1.2
2,095,813	-		MIT1002_01883	0.28	-0.1
2,095,883	-		MIT1002_01883	0.32	-0.4
2,095,892	+		MIT1002_01883	0.33	-0.7
2,095,894	+		MIT1002_01883	0.33	-0.7
2,095,894	+		MIT1002_01883	0.33	+0.3
2,095,902	-		MIT1002_01883	0.34	-0.7
2,095,902	-		MIT1002_01883	0.34	+0.3
2,095,902	-		MIT1002_01883	0.34	-0.6
2,095,902	-		MIT1002_01883	0.34	+1.5
2,095,906	+		MIT1002_01883	0.34	-0.3
2,095,916	+		MIT1002_01883	0.35	-0.4
2,095,939	+		MIT1002_01883	0.36	-0.6
2,095,939	+		MIT1002_01883	0.36	+0.3
2,095,947	-		MIT1002_01883	0.37	-1.2
2,095,953	+		MIT1002_01883	0.37	+0.8
2,095,953	+		MIT1002_01883	0.37	+1.3
2,095,953	+		MIT1002_01883	0.37	+0.2