Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01469

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,625,344	+				-3.9
1,625,344	+				-2.2
1,625,344	+				-3.1
1,625,344	+				-1.0
1,625,344	+				-3.3
1,625,352	-				-3.8
1,625,375	+				-0.7
1,625,383	-				-2.1
1,625,406	+				-4.0
1,625,467	+				+0.1
1,625,509	+				+0.4
1,625,510	+				-0.3
1,625,612	-				+5.3
1,625,724	-		MIT1002_01468	0.24	+4.0
1,625,748	+		MIT1002_01468	0.29	+5.1
1,625,800	+		MIT1002_01468	0.40	+5.2
1,625,878	+		MIT1002_01468	0.57	+3.7
1,626,092	+				+1.0
1,626,100	-				-0.6
1,626,108	-				-0.4
1,626,114	+				-0.9
1,626,208	+				+1.2
1,626,213	+				+0.6
1,626,213	+				-1.2
1,626,342	+				-0.9
1,626,352	+				+0.6
1,626,368	-				+0.7
1,626,374	+				+0.1
1,626,379	+				+1.0
1,626,444	+				+0.1
1,626,450	+				-0.8
1,626,451	+				+0.2
1,626,459	-				+0.9
1,626,486	-		MIT1002_01469	0.10	-1.3
1,626,519	-		MIT1002_01469	0.12	-0.7
1,626,519	-		MIT1002_01469	0.12	-0.6
1,626,553	-		MIT1002_01469	0.14	-0.1
1,626,561	-		MIT1002_01469	0.14	-1.6
1,626,608	-		MIT1002_01469	0.17	-0.2
1,626,665	+		MIT1002_01469	0.20	+2.0
1,626,685	-		MIT1002_01469	0.21	+0.1
1,626,935	+		MIT1002_01469	0.34	+2.0
1,627,013	-		MIT1002_01469	0.39	+0.2
1,627,028	+		MIT1002_01469	0.39	-0.2
1,627,055	+		MIT1002_01469	0.41	+0.0
1,627,081	+		MIT1002_01469	0.42	-1.7
1,627,156	-		MIT1002_01469	0.46	-1.6
1,627,167	-		MIT1002_01469	0.47	+0.4
1,627,168	-		MIT1002_01469	0.47	+0.1
1,627,174	-		MIT1002_01469	0.47	-0.3
1,627,290	-		MIT1002_01469	0.54	-0.6
1,627,368	+		MIT1002_01469	0.58	+2.4
1,627,369	+		MIT1002_01469	0.58	+0.8
1,627,380	+		MIT1002_01469	0.58	+0.1
1,627,438	+		MIT1002_01469	0.62	-1.7
1,627,443	+		MIT1002_01469	0.62	+0.0
1,627,443	+		MIT1002_01469	0.62	-0.3
1,627,451	-		MIT1002_01469	0.62	-0.7
1,627,451	-		MIT1002_01469	0.62	+0.7
1,627,452	+		MIT1002_01469	0.62	+0.6
1,627,452	+		MIT1002_01469	0.62	-0.3
1,627,452	+		MIT1002_01469	0.62	+2.3
1,627,452	+		MIT1002_01469	0.62	+0.4
1,627,452	+		MIT1002_01469	0.62	-0.7
1,627,460	-		MIT1002_01469	0.63	+0.4
1,627,460	-		MIT1002_01469	0.63	-1.6
1,627,460	-		MIT1002_01469	0.63	+4.3
1,627,460	-		MIT1002_01469	0.63	+0.9
1,627,532	+		MIT1002_01469	0.67	+0.3
1,627,582	+		MIT1002_01469	0.69	-0.0
1,627,582	+		MIT1002_01469	0.69	+3.3
1,627,582	+		MIT1002_01469	0.69	-1.7
1,627,582	+		MIT1002_01469	0.69	-1.1
1,627,775	-		MIT1002_01469	0.80	-0.4
1,627,784	+		MIT1002_01469	0.80	-1.6
1,627,792	-		MIT1002_01469	0.81	-0.9
1,627,802	-		MIT1002_01469	0.81	+1.4
1,627,820	+		MIT1002_01469	0.82	+0.4
1,627,820	+		MIT1002_01469	0.82	+0.1
1,627,826	-		MIT1002_01469	0.83	+1.9
1,627,828	-		MIT1002_01469	0.83	+0.0
1,627,856	-		MIT1002_01469	0.84	+0.1
1,627,984	-				+1.1
1,627,985	-				-0.6
1,627,986	-				-0.6
1,628,011	+				-0.7
1,628,011	+				+0.7
1,628,019	-				+0.6
1,628,030	-				-0.1
1,628,098	-				+0.6
1,628,116	+				-1.0
1,628,149	+				+0.3
1,628,214	+		MIT1002_01470	0.10	+0.1
1,628,234	-		MIT1002_01470	0.14	-0.5
1,628,265	-		MIT1002_01470	0.20	+0.8
1,628,318	+		MIT1002_01470	0.29	-0.5
1,628,325	+		MIT1002_01470	0.31	+0.1
1,628,326	-		MIT1002_01470	0.31	-0.0
1,628,346	-		MIT1002_01470	0.35	+1.9
1,628,354	-		MIT1002_01470	0.36	+0.7
1,628,364	-		MIT1002_01470	0.38	+0.3
1,628,379	-		MIT1002_01470	0.41	-1.8
1,628,387	-		MIT1002_01470	0.42	-1.9
1,628,389	+		MIT1002_01470	0.43	-1.3
1,628,403	-		MIT1002_01470	0.45	-0.3
1,628,550	-		MIT1002_01470	0.72	-0.1
1,628,599	-		MIT1002_01470	0.81	-0.1
1,628,601	+		MIT1002_01470	0.82	-0.1
1,628,609	-		MIT1002_01470	0.83	+1.2
1,628,609	-		MIT1002_01470	0.83	+0.4
1,628,609	-		MIT1002_01470	0.83	-0.4
1,628,609	-		MIT1002_01470	0.83	+0.1
1,628,655	+				+0.5
1,628,664	-				+0.6
1,628,668	+				-1.1
1,628,668	+				-0.3
1,628,714	-				+1.9
1,628,763	-				+0.7
1,628,878	+		MIT1002_01471	0.22	-1.3
1,628,888	+		MIT1002_01471	0.25	-0.4
1,628,888	+		MIT1002_01471	0.25	-1.1
1,628,954	-		MIT1002_01471	0.42	-0.6
1,629,001	+		MIT1002_01471	0.54	+1.4
1,629,083	+		MIT1002_01471	0.75	+0.6
1,629,083	-		MIT1002_01471	0.75	+0.1
1,629,083	-		MIT1002_01471	0.75	-1.3
1,629,133	-		MIT1002_01471	0.87	-0.4