Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01448

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,593,103	+		MIT1002_01447	0.24	-1.0
1,593,231	+		MIT1002_01447	0.35	+0.3
1,593,239	-		MIT1002_01447	0.35	-0.2
1,593,262	-		MIT1002_01447	0.37	+0.4
1,593,316	+		MIT1002_01447	0.42	-0.9
1,593,335	+		MIT1002_01447	0.44	+0.0
1,593,343	-		MIT1002_01447	0.44	+0.2
1,593,421	+		MIT1002_01447	0.51	-0.2
1,593,427	-		MIT1002_01447	0.52	+1.2
1,593,429	-		MIT1002_01447	0.52	-1.6
1,593,429	-		MIT1002_01447	0.52	+2.3
1,593,479	-		MIT1002_01447	0.56	+0.2
1,593,494	+		MIT1002_01447	0.57	+0.9
1,593,494	+		MIT1002_01447	0.57	+1.0
1,593,511	+		MIT1002_01447	0.59	+0.2
1,593,622	-		MIT1002_01447	0.68	-0.4
1,593,668	-		MIT1002_01447	0.72	-1.4
1,593,730	-		MIT1002_01447	0.78	+0.3
1,593,739	-		MIT1002_01447	0.79	+0.9
1,593,754	+		MIT1002_01447	0.80	-2.0
1,593,754	-		MIT1002_01447	0.80	+0.4
1,593,828	-		MIT1002_01447	0.86	+0.4
1,593,831	+		MIT1002_01447	0.86	-2.2
1,593,839	-		MIT1002_01447	0.87	-0.3
1,593,887	-				+0.6
1,593,914	-				+0.6
1,594,093	-				-0.2
1,594,104	+				+1.5
1,594,104	+				+0.2
1,594,104	+				+0.2
1,594,128	-				-0.1
1,594,135	-				+0.0
1,594,135	-				+1.3
1,594,145	-				+0.9
1,594,308	+		MIT1002_01448	0.28	+0.3
1,594,323	+		MIT1002_01448	0.30	-2.3
1,594,383	+		MIT1002_01448	0.38	+1.1
1,594,419	+		MIT1002_01448	0.42	+0.3
1,594,427	-		MIT1002_01448	0.43	-0.7
1,594,511	+		MIT1002_01448	0.54	+0.9
1,594,560	-		MIT1002_01448	0.61	+1.1
1,594,597	+		MIT1002_01448	0.65	+0.0
1,594,618	-		MIT1002_01448	0.68	+2.1
1,594,629	-		MIT1002_01448	0.70	+3.2
1,594,681	+		MIT1002_01448	0.76	+0.1
1,594,689	-		MIT1002_01448	0.77	-0.5
1,594,777	-		MIT1002_01448	0.89	-0.8
1,594,830	-				+0.3
1,594,876	+				-0.4
1,594,897	+				+0.6
1,594,919	+				-1.9
1,595,078	+		MIT1002_01449	0.21	+0.2
1,595,100	-		MIT1002_01449	0.23	+0.5
1,595,123	+		MIT1002_01449	0.25	-0.4
1,595,123	+		MIT1002_01449	0.25	-0.3
1,595,131	-		MIT1002_01449	0.26	-0.5
1,595,131	-		MIT1002_01449	0.26	+0.1
1,595,131	-		MIT1002_01449	0.26	+0.4
1,595,131	-		MIT1002_01449	0.26	-0.3
1,595,142	+		MIT1002_01449	0.27	-0.5
1,595,157	-		MIT1002_01449	0.28	-0.7
1,595,157	-		MIT1002_01449	0.28	+0.3
1,595,175	+		MIT1002_01449	0.30	-0.6
1,595,175	+		MIT1002_01449	0.30	+0.5
1,595,183	-		MIT1002_01449	0.31	-1.1
1,595,190	+		MIT1002_01449	0.31	-0.7
1,595,266	+		MIT1002_01449	0.38	+0.3
1,595,310	-		MIT1002_01449	0.43	-1.0
1,595,312	+		MIT1002_01449	0.43	-0.5
1,595,408	-		MIT1002_01449	0.52	-0.9
1,595,418	+		MIT1002_01449	0.53	-0.7
1,595,505	+		MIT1002_01449	0.61	-0.0
1,595,505	+		MIT1002_01449	0.61	+0.1
1,595,505	+		MIT1002_01449	0.61	-0.1
1,595,506	-		MIT1002_01449	0.61	+0.6
1,595,507	+		MIT1002_01449	0.61	+0.5
1,595,513	-		MIT1002_01449	0.62	+0.4
1,595,641	+		MIT1002_01449	0.73	+0.1
1,595,641	+		MIT1002_01449	0.73	-1.0
1,595,658	+		MIT1002_01449	0.75	+1.2
1,595,658	+		MIT1002_01449	0.75	-2.4
1,595,679	+		MIT1002_01449	0.77	+3.3
1,595,780	+		MIT1002_01449	0.86	-0.3
1,595,820	+				+1.3
1,595,830	+				+0.1
1,595,857	-				+2.4