Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01394

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,542,939	-		MIT1002_01391	0.71	-0.6
1,542,974	+		MIT1002_01391	0.74	+1.4
1,542,976	+		MIT1002_01391	0.74	+0.7
1,542,976	+		MIT1002_01391	0.74	-0.1
1,542,991	+		MIT1002_01391	0.75	-0.7
1,542,991	+		MIT1002_01391	0.75	+0.9
1,543,007	-		MIT1002_01391	0.76	+2.0
1,543,163	-		MIT1002_01391	0.88	+1.0
1,543,186	+		MIT1002_01391	0.89	+0.6
1,543,187	-		MIT1002_01391	0.89	-0.1
1,543,237	-				-0.2
1,543,333	-				+0.1
1,543,834	+		MIT1002_01393	0.54	+0.3
1,543,843	+		MIT1002_01393	0.58	-1.1
1,543,866	-		MIT1002_01393	0.69	-1.0
1,543,884	-		MIT1002_01393	0.77	-0.4
1,543,977	-				-0.6
1,543,992	-				-0.1
1,544,004	-				+1.4
1,544,004	-				+0.6
1,544,050	-				+0.2
1,544,080	+				+1.4
1,544,109	+				+1.2
1,544,109	+				-2.2
1,544,109	+				-1.0
1,544,109	+				-0.5
1,544,109	+				+0.0
1,544,109	+				-0.2
1,544,117	-		MIT1002_01394	0.10	-0.2
1,544,117	-		MIT1002_01394	0.10	+1.1
1,544,117	-		MIT1002_01394	0.10	+1.1
1,544,132	+		MIT1002_01394	0.11	+1.1
1,544,175	+		MIT1002_01394	0.13	+1.6
1,544,183	-		MIT1002_01394	0.14	+0.7
1,544,188	+		MIT1002_01394	0.14	-1.2
1,544,231	+		MIT1002_01394	0.16	-0.0
1,544,231	+		MIT1002_01394	0.16	+0.7
1,544,231	+		MIT1002_01394	0.16	-0.0
1,544,283	+		MIT1002_01394	0.19	-0.1
1,544,291	-		MIT1002_01394	0.20	-1.8
1,544,304	+		MIT1002_01394	0.20	+0.6
1,544,429	+		MIT1002_01394	0.27	+0.3
1,544,429	+		MIT1002_01394	0.27	+0.1
1,544,437	-		MIT1002_01394	0.28	-0.1
1,544,437	-		MIT1002_01394	0.28	+0.7
1,544,441	+		MIT1002_01394	0.28	-1.2
1,544,532	+		MIT1002_01394	0.33	+0.9
1,544,535	-		MIT1002_01394	0.33	-0.1
1,544,568	+		MIT1002_01394	0.35	-1.5
1,544,606	-		MIT1002_01394	0.37	-0.2
1,544,633	-		MIT1002_01394	0.38	+0.9
1,544,633	-		MIT1002_01394	0.38	-0.6
1,544,639	-		MIT1002_01394	0.39	-1.1
1,544,718	-		MIT1002_01394	0.43	-1.5
1,544,819	-		MIT1002_01394	0.49	-0.7
1,544,923	-		MIT1002_01394	0.54	-1.4
1,545,020	+		MIT1002_01394	0.60	+1.0
1,545,203	-		MIT1002_01394	0.70	-0.9
1,545,203	-		MIT1002_01394	0.70	+0.5
1,545,258	+		MIT1002_01394	0.73	-0.4
1,545,266	-		MIT1002_01394	0.73	-2.1
1,545,290	+		MIT1002_01394	0.75	-2.0
1,545,390	+		MIT1002_01394	0.80	-2.5
1,545,390	+		MIT1002_01394	0.80	+1.5
1,545,390	+		MIT1002_01394	0.80	-1.4
1,545,393	-		MIT1002_01394	0.80	+0.6
1,545,398	-		MIT1002_01394	0.80	-1.1
1,545,431	-		MIT1002_01394	0.82	+0.5
1,545,522	+		MIT1002_01394	0.87	-1.4
1,545,532	+		MIT1002_01394	0.88	+1.5
1,545,596	+				-0.8
1,545,596	+				+0.0
1,545,640	+				-0.6
1,545,643	-				-2.2
1,545,645	-				+0.1
1,545,683	+				+0.4
1,545,760	-				+0.5
1,545,775	-				-1.9
1,545,792	-				-0.5
1,545,844	-				-0.2
1,545,849	-				-2.6
1,546,057	+				-0.4
1,546,062	+				+0.6
1,546,062	+				+0.4
1,546,062	+				-0.7
1,546,062	+				+1.9
1,546,062	+				-0.7
1,546,062	+				-1.1
1,546,062	+				-1.2
1,546,062	+				-0.3
1,546,062	+				+0.0
1,546,065	-				-1.5
1,546,070	-				+0.0
1,546,070	-				+0.5
1,546,180	+		MIT1002_01395	0.11	+0.8
1,546,205	-		MIT1002_01395	0.13	+0.6
1,546,408	+		MIT1002_01395	0.34	-0.2
1,546,408	+		MIT1002_01395	0.34	-3.5
1,546,408	+		MIT1002_01395	0.34	-1.1
1,546,408	+		MIT1002_01395	0.34	-1.1
1,546,408	+		MIT1002_01395	0.34	-0.5
1,546,414	+		MIT1002_01395	0.35	+0.5
1,546,416	-		MIT1002_01395	0.35	-1.5
1,546,416	-		MIT1002_01395	0.35	+0.4
1,546,416	-		MIT1002_01395	0.35	-0.0
1,546,416	-		MIT1002_01395	0.35	+1.7
1,546,416	-		MIT1002_01395	0.35	-0.2
1,546,439	+		MIT1002_01395	0.37	+0.1
1,546,447	-		MIT1002_01395	0.38	+2.0
1,546,471	+		MIT1002_01395	0.41	+2.1
1,546,490	-		MIT1002_01395	0.43	+0.0
1,546,526	+		MIT1002_01395	0.46	-0.7
1,546,557	-		MIT1002_01395	0.49	+0.7
1,546,613	-		MIT1002_01395	0.55	-0.4
1,546,638	+		MIT1002_01395	0.58	+0.8
1,546,677	+		MIT1002_01395	0.62	-1.3