Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01361

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,506,242	-		MIT1002_01360	0.30	+0.4
1,506,281	+		MIT1002_01360	0.34	-1.1
1,506,288	+		MIT1002_01360	0.35	-0.2
1,506,298	-		MIT1002_01360	0.36	+0.2
1,506,298	-		MIT1002_01360	0.36	-0.2
1,506,301	-		MIT1002_01360	0.36	-0.1
1,506,319	+		MIT1002_01360	0.38	+0.1
1,506,345	+		MIT1002_01360	0.40	-0.1
1,506,345	+		MIT1002_01360	0.40	+0.8
1,506,515	+		MIT1002_01360	0.56	-0.1
1,506,526	-		MIT1002_01360	0.57	+1.2
1,506,560	-		MIT1002_01360	0.60	-0.7
1,506,596	-		MIT1002_01360	0.63	+0.4
1,506,597	+		MIT1002_01360	0.63	+0.1
1,506,597	+		MIT1002_01360	0.63	+0.7
1,506,597	+		MIT1002_01360	0.63	-0.4
1,506,605	-		MIT1002_01360	0.64	+1.0
1,506,608	-		MIT1002_01360	0.64	+0.5
1,506,667	-		MIT1002_01360	0.70	+0.7
1,506,678	-		MIT1002_01360	0.71	+0.8
1,506,758	+		MIT1002_01360	0.78	+0.2
1,506,775	-		MIT1002_01360	0.79	+1.1
1,506,880	+		MIT1002_01360	0.89	-0.2
1,506,993	+				-0.3
1,507,000	+				+4.7
1,507,177	-				-3.1
1,507,213	-				-2.7
1,507,336	-		MIT1002_01361	0.22	-1.2
1,507,343	+		MIT1002_01361	0.23	-2.1
1,507,381	-		MIT1002_01361	0.29	-3.9
1,507,499	-		MIT1002_01361	0.48	-1.4
1,507,592	+		MIT1002_01361	0.63	-2.8
1,507,600	-		MIT1002_01361	0.65	-0.8
1,507,600	-		MIT1002_01361	0.65	-1.1
1,507,612	-		MIT1002_01361	0.67	+0.5
1,507,617	+		MIT1002_01361	0.67	+0.2
1,507,617	+		MIT1002_01361	0.67	-0.7
1,507,647	-		MIT1002_01361	0.72	-2.4
1,507,707	+		MIT1002_01361	0.82	-2.6
1,507,721	-		MIT1002_01361	0.84	-3.1
1,507,806	-				-2.0
1,507,808	+				+0.7
1,507,808	+				+0.2
1,507,816	-				+0.1
1,507,956	+				-2.0
1,507,957	-				-0.8
1,508,291	+				-2.0
1,508,307	-				-1.4
1,508,370	-				-0.5
1,508,430	+				-0.3
1,508,435	+				-0.7
1,508,453	-				-1.6
1,508,470	-				+1.1
1,508,493	-				+0.5
1,508,569	+		MIT1002_01362	0.12	-1.1
1,508,577	-		MIT1002_01362	0.12	-2.0
1,508,579	-		MIT1002_01362	0.12	-1.5
1,508,588	+		MIT1002_01362	0.13	-2.5
1,508,588	+		MIT1002_01362	0.13	-0.8
1,508,621	-		MIT1002_01362	0.14	+0.0
1,508,653	-		MIT1002_01362	0.16	-1.5
1,508,678	+		MIT1002_01362	0.17	-1.7
1,508,678	+		MIT1002_01362	0.17	-0.8
1,508,681	-		MIT1002_01362	0.17	-2.3
1,508,693	+		MIT1002_01362	0.18	-0.8
1,508,749	+		MIT1002_01362	0.20	-1.0
1,508,761	+		MIT1002_01362	0.21	-1.5