Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01209

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,331,298	-				+0.6
1,331,306	-				-0.5
1,331,306	-				-0.3
1,331,327	-				-0.9
1,331,341	+				+0.3
1,331,349	-		MIT1002_01208	0.11	+2.3
1,331,428	+		MIT1002_01208	0.19	-0.0
1,331,428	+		MIT1002_01208	0.19	+0.3
1,331,428	+		MIT1002_01208	0.19	+1.3
1,331,436	-		MIT1002_01208	0.20	-0.5
1,331,451	+		MIT1002_01208	0.22	+0.2
1,331,482	+		MIT1002_01208	0.25	+0.4
1,331,491	+		MIT1002_01208	0.26	+0.0
1,331,491	+		MIT1002_01208	0.26	+1.3
1,331,499	-		MIT1002_01208	0.27	+1.5
1,331,499	-		MIT1002_01208	0.27	+0.1
1,331,541	-		MIT1002_01208	0.32	+0.1
1,331,546	-		MIT1002_01208	0.32	+1.4
1,331,551	-		MIT1002_01208	0.33	+0.1
1,331,556	-		MIT1002_01208	0.33	-1.8
1,331,611	+		MIT1002_01208	0.39	-1.2
1,331,616	+		MIT1002_01208	0.40	+1.0
1,331,617	+		MIT1002_01208	0.40	+0.2
1,331,624	-		MIT1002_01208	0.41	+0.7
1,331,624	-		MIT1002_01208	0.41	+1.2
1,331,625	-		MIT1002_01208	0.41	-0.6
1,331,625	-		MIT1002_01208	0.41	-0.5
1,331,792	-		MIT1002_01208	0.59	+1.1
1,331,893	+		MIT1002_01208	0.70	+3.3
1,331,937	+		MIT1002_01208	0.75	+0.4
1,331,977	+		MIT1002_01208	0.79	+1.5
1,331,987	+		MIT1002_01208	0.80	+1.0
1,332,026	+		MIT1002_01208	0.85	+0.0
1,332,026	+		MIT1002_01208	0.85	-0.7
1,332,034	-		MIT1002_01208	0.86	+1.4
1,332,034	-		MIT1002_01208	0.86	-0.0
1,332,034	-		MIT1002_01208	0.86	-0.9
1,332,034	-		MIT1002_01208	0.86	+0.4
1,332,053	+		MIT1002_01208	0.88	-0.8
1,332,061	-		MIT1002_01208	0.89	-1.2
1,332,184	+				+2.2
1,332,283	+				-1.4
1,332,328	+				-0.4
1,332,336	-				-3.6
1,332,336	-				+1.5
1,332,336	-				+1.7
1,332,375	-		MIT1002_01209	0.12	-0.5
1,332,390	+		MIT1002_01209	0.14	+1.2
1,332,390	+		MIT1002_01209	0.14	-1.9
1,332,398	-		MIT1002_01209	0.15	+0.1
1,332,398	-		MIT1002_01209	0.15	-0.5
1,332,398	-		MIT1002_01209	0.15	+0.8
1,332,398	-		MIT1002_01209	0.15	+0.4
1,332,398	-		MIT1002_01209	0.15	+0.4
1,332,445	+		MIT1002_01209	0.20	+0.5
1,332,473	-		MIT1002_01209	0.23	-2.0
1,332,492	+		MIT1002_01209	0.26	-1.6
1,332,518	-		MIT1002_01209	0.29	-1.0
1,332,518	-		MIT1002_01209	0.29	+0.7
1,332,520	+		MIT1002_01209	0.29	-0.6
1,332,563	-		MIT1002_01209	0.34	-1.6
1,332,563	-		MIT1002_01209	0.34	-2.0
1,332,569	+		MIT1002_01209	0.35	+0.5
1,332,569	+		MIT1002_01209	0.35	-2.3
1,332,569	+		MIT1002_01209	0.35	+1.0
1,332,569	+		MIT1002_01209	0.35	-0.1
1,332,591	-		MIT1002_01209	0.37	+0.5
1,332,602	+		MIT1002_01209	0.38	+0.0
1,332,602	+		MIT1002_01209	0.38	-0.0
1,332,610	-		MIT1002_01209	0.39	+2.2
1,332,750	+		MIT1002_01209	0.56	-3.0
1,332,750	+		MIT1002_01209	0.56	+0.8
1,332,772	-		MIT1002_01209	0.58	+0.4
1,332,853	+		MIT1002_01209	0.68	-0.7
1,332,861	-		MIT1002_01209	0.69	+1.0
1,332,877	-		MIT1002_01209	0.71	-0.9
1,332,899	-		MIT1002_01209	0.73	-1.6
1,332,944	-		MIT1002_01209	0.78	-1.6
1,332,967	+		MIT1002_01209	0.81	-1.2
1,332,967	+		MIT1002_01209	0.81	-1.5
1,332,967	+		MIT1002_01209	0.81	+0.4
1,332,975	-		MIT1002_01209	0.82	-1.6
1,332,982	+		MIT1002_01209	0.83	-0.1
1,332,990	-		MIT1002_01209	0.84	+0.3
1,332,990	-		MIT1002_01209	0.84	-1.5
1,333,094	-				+0.6
1,333,094	-				+0.5
1,333,094	-				-0.2
1,333,106	-				+0.1
1,333,106	-				-0.8
1,333,268	+				+0.4
1,333,268	+				-1.2
1,333,276	-				-0.0
1,333,276	-				+0.6
1,333,335	-		MIT1002_01210	0.14	-0.5
1,333,337	+		MIT1002_01210	0.15	+0.4
1,333,345	+		MIT1002_01210	0.16	+3.7
1,333,350	-		MIT1002_01210	0.18	-0.9
1,333,369	-		MIT1002_01210	0.22	+0.6
1,333,418	-		MIT1002_01210	0.33	-1.4
1,333,463	+		MIT1002_01210	0.43	+0.0
1,333,471	-		MIT1002_01210	0.45	+0.4
1,333,499	+		MIT1002_01210	0.52	+0.1
1,333,522	+		MIT1002_01210	0.57	-0.0
1,333,537	+		MIT1002_01210	0.60	-0.8
1,333,543	+		MIT1002_01210	0.62	+0.1
1,333,545	-		MIT1002_01210	0.62	+0.5
1,333,545	-		MIT1002_01210	0.62	+1.2
1,333,595	+		MIT1002_01210	0.74	-0.2
1,333,639	+		MIT1002_01210	0.84	+0.0
1,333,639	+		MIT1002_01210	0.84	+0.2
1,333,639	+		MIT1002_01210	0.84	-0.0
1,333,639	+		MIT1002_01210	0.84	+0.5
1,333,639	+		MIT1002_01210	0.84	-1.2
1,333,647	-		MIT1002_01210	0.85	-1.0
1,333,647	-		MIT1002_01210	0.85	-0.4
1,333,647	-		MIT1002_01210	0.85	-0.0
1,333,647	-		MIT1002_01210	0.85	-0.2
1,333,677	+				-0.4
1,333,735	-				-0.9
1,333,735	-				-0.8
1,333,820	+		MIT1002_01211	0.11	+0.2
1,333,904	-		MIT1002_01211	0.19	-1.6
1,333,904	-		MIT1002_01211	0.19	+0.1
1,333,921	-		MIT1002_01211	0.20	-0.2
1,333,929	-		MIT1002_01211	0.21	+0.2
1,334,022	-		MIT1002_01211	0.29	-0.4
1,334,125	+		MIT1002_01211	0.38	+0.7
1,334,127	+		MIT1002_01211	0.38	+0.6