Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01050

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,158,225	-				-1.4
1,158,273	+				+0.2
1,158,304	+				-2.4
1,158,469	+		MIT1002_01049	0.26	+0.6
1,158,469	+		MIT1002_01049	0.26	-0.3
1,158,512	-		MIT1002_01049	0.30	-0.6
1,158,548	-		MIT1002_01049	0.34	+0.2
1,158,564	-		MIT1002_01049	0.36	+0.0
1,158,575	+		MIT1002_01049	0.37	-0.7
1,158,575	+		MIT1002_01049	0.37	-1.0
1,158,583	-		MIT1002_01049	0.38	+0.6
1,158,618	+		MIT1002_01049	0.42	-1.4
1,158,620	+		MIT1002_01049	0.42	-0.2
1,158,620	+		MIT1002_01049	0.42	-0.6
1,158,623	-		MIT1002_01049	0.42	+2.4
1,158,649	-		MIT1002_01049	0.45	-0.2
1,158,649	-		MIT1002_01049	0.45	-0.3
1,158,651	-		MIT1002_01049	0.45	+0.8
1,158,708	+		MIT1002_01049	0.51	+2.2
1,158,714	-		MIT1002_01049	0.52	+0.4
1,158,727	+		MIT1002_01049	0.53	+0.1
1,158,781	-		MIT1002_01049	0.59	-1.6
1,158,801	+		MIT1002_01049	0.61	+0.2
1,158,925	-		MIT1002_01049	0.74	-0.7
1,158,998	-		MIT1002_01049	0.82	-2.1
1,159,005	-		MIT1002_01049	0.82	+0.9
1,159,006	-		MIT1002_01049	0.82	-1.2
1,159,007	+		MIT1002_01049	0.83	+1.6
1,159,023	-		MIT1002_01049	0.84	+0.6
1,159,026	+		MIT1002_01049	0.85	+0.6
1,159,069	+		MIT1002_01049	0.89	-0.7
1,159,110	+				+0.3
1,159,134	+				+0.9
1,159,134	+				-1.8
1,159,136	+				-0.2
1,159,142	-				-0.2
1,159,159	+				-1.8
1,159,172	+				+1.3
1,159,241	-				-0.5
1,159,252	+				+2.2
1,159,307	+				-0.0
1,159,342	+				+0.6
1,159,347	-				-0.0
1,159,426	-		MIT1002_01050	0.12	-0.4
1,159,465	-		MIT1002_01050	0.14	-0.5
1,159,481	-		MIT1002_01050	0.14	-2.0
1,159,495	-		MIT1002_01050	0.15	-0.9
1,159,500	-		MIT1002_01050	0.15	+0.3
1,159,545	-		MIT1002_01050	0.17	-1.6
1,159,546	-		MIT1002_01050	0.17	+0.2
1,159,652	-		MIT1002_01050	0.23	+2.3
1,159,749	+		MIT1002_01050	0.27	-2.4
1,159,749	+		MIT1002_01050	0.27	-0.2
1,159,757	-		MIT1002_01050	0.28	-1.0
1,159,822	-		MIT1002_01050	0.31	-0.4
1,160,011	+		MIT1002_01050	0.40	-0.3
1,160,013	+		MIT1002_01050	0.40	+0.6
1,160,023	+		MIT1002_01050	0.41	-0.7
1,160,148	-		MIT1002_01050	0.47	-0.7
1,160,208	+		MIT1002_01050	0.50	-1.0
1,160,219	+		MIT1002_01050	0.50	-0.4
1,160,260	+		MIT1002_01050	0.52	+0.4
1,160,309	-		MIT1002_01050	0.55	+1.0
1,160,335	+		MIT1002_01050	0.56	-1.0
1,160,335	+		MIT1002_01050	0.56	-0.7
1,160,374	+		MIT1002_01050	0.58	+0.2
1,160,400	+		MIT1002_01050	0.59	+0.6
1,160,435	+		MIT1002_01050	0.61	+0.3
1,160,443	-		MIT1002_01050	0.61	-1.1
1,160,448	-		MIT1002_01050	0.62	+1.4
1,160,522	-		MIT1002_01050	0.65	-0.6
1,160,588	+		MIT1002_01050	0.68	-0.0
1,160,593	+		MIT1002_01050	0.69	+0.6
1,160,593	+		MIT1002_01050	0.69	-1.9
1,160,593	+		MIT1002_01050	0.69	-1.1
1,160,593	+		MIT1002_01050	0.69	+1.2
1,160,596	-		MIT1002_01050	0.69	-1.2
1,160,601	-		MIT1002_01050	0.69	-0.6
1,160,601	-		MIT1002_01050	0.69	-1.0
1,160,603	+		MIT1002_01050	0.69	+0.1
1,160,656	-		MIT1002_01050	0.72	-0.6
1,160,674	+		MIT1002_01050	0.73	+1.2
1,160,728	-		MIT1002_01050	0.75	+1.1
1,160,749	+		MIT1002_01050	0.76	-1.8
1,160,757	-		MIT1002_01050	0.77	+1.7
1,160,758	+		MIT1002_01050	0.77	+0.4
1,160,764	-		MIT1002_01050	0.77	-0.6
1,160,767	-		MIT1002_01050	0.77	+0.9
1,160,767	-		MIT1002_01050	0.77	+3.1
1,160,787	+		MIT1002_01050	0.78	-0.2
1,160,805	+		MIT1002_01050	0.79	-0.1
1,160,833	+		MIT1002_01050	0.80	-0.1
1,160,857	+		MIT1002_01050	0.82	+1.0
1,160,945	+		MIT1002_01050	0.86	+0.0
1,160,984	+		MIT1002_01050	0.88	-0.1
1,161,010	-		MIT1002_01050	0.89	-1.4
1,161,098	+				+1.1
1,161,323	-				-0.6
1,161,323	-				+0.6
1,161,352	+				-1.6
1,161,365	-		MIT1002_01051	0.10	-0.4
1,161,401	+		MIT1002_01051	0.13	+0.4
1,161,409	-		MIT1002_01051	0.14	-1.0
1,161,419	-		MIT1002_01051	0.15	+1.2
1,161,450	+		MIT1002_01051	0.17	+0.8
1,161,459	+		MIT1002_01051	0.18	+0.4
1,161,461	-		MIT1002_01051	0.18	-1.0
1,161,467	-		MIT1002_01051	0.19	+0.9
1,161,467	-		MIT1002_01051	0.19	-1.9
1,161,471	-		MIT1002_01051	0.19	+0.4
1,161,473	+		MIT1002_01051	0.19	-0.8
1,161,473	+		MIT1002_01051	0.19	-0.6
1,161,473	+		MIT1002_01051	0.19	+1.4
1,161,473	+		MIT1002_01051	0.19	-1.7
1,161,473	+		MIT1002_01051	0.19	-0.2
1,161,481	-		MIT1002_01051	0.20	-1.2
1,161,481	-		MIT1002_01051	0.20	-0.9
1,161,481	-		MIT1002_01051	0.20	+0.7
1,161,481	-		MIT1002_01051	0.20	-1.3
1,161,481	-		MIT1002_01051	0.20	-0.5
1,161,537	-		MIT1002_01051	0.25	-1.1
1,161,571	-		MIT1002_01051	0.27	-0.3
1,161,575	+		MIT1002_01051	0.28	+1.9
1,161,633	+		MIT1002_01051	0.32	-0.9
1,161,678	+		MIT1002_01051	0.36	-0.3
1,161,680	-		MIT1002_01051	0.36	-1.0
1,161,783	+		MIT1002_01051	0.45	-1.7
1,161,791	-		MIT1002_01051	0.45	+0.3
1,161,803	+		MIT1002_01051	0.46	-0.5
1,161,811	-		MIT1002_01051	0.47	-0.0
1,161,837	+		MIT1002_01051	0.49	-0.0
1,161,837	+		MIT1002_01051	0.49	-0.0
1,161,837	+		MIT1002_01051	0.49	-0.4
1,161,840	-		MIT1002_01051	0.49	+1.6
1,161,845	-		MIT1002_01051	0.50	+1.0
1,161,845	-		MIT1002_01051	0.50	-1.6
1,161,948	+		MIT1002_01051	0.58	+0.5
1,161,989	+		MIT1002_01051	0.62	-2.2
1,162,004	+		MIT1002_01051	0.63	-3.2
1,162,123	-		MIT1002_01051	0.73	-0.3
1,162,210	+		MIT1002_01051	0.80	-0.8
1,162,228	+		MIT1002_01051	0.81	+0.0
1,162,228	+		MIT1002_01051	0.81	-0.3