Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00986

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
1,092,443	+		MIT1002_00984	0.83	+0.3
1,092,500	+		MIT1002_00984	0.86	+0.9
1,092,500	+		MIT1002_00984	0.86	-0.9
1,092,601	-				-0.4
1,092,601	-				+0.6
1,092,601	-				+0.9
1,092,728	-				-1.2
1,092,759	-				+0.7
1,092,815	-		MIT1002_00985	0.22	-0.8
1,092,821	+		MIT1002_00985	0.24	+0.9
1,092,917	-		MIT1002_00985	0.49	-1.4
1,092,938	+		MIT1002_00985	0.55	+0.7
1,092,954	-		MIT1002_00985	0.59	-2.9
1,092,976	+		MIT1002_00985	0.65	-1.6
1,092,992	+		MIT1002_00985	0.69	+1.7
1,093,207	+				+1.6
1,093,215	-				+1.9
1,093,215	-				-1.6
1,093,225	-				-1.1
1,093,333	-				+3.6
1,093,354	-				+0.6
1,093,381	+				-0.6
1,093,466	-		MIT1002_00986	0.12	+0.3
1,093,468	-		MIT1002_00986	0.12	-0.5
1,093,472	+		MIT1002_00986	0.12	-1.7
1,093,472	+		MIT1002_00986	0.12	+1.3
1,093,472	+		MIT1002_00986	0.12	-1.0
1,093,480	-		MIT1002_00986	0.13	+0.7
1,093,480	-		MIT1002_00986	0.13	+0.7
1,093,527	+		MIT1002_00986	0.16	-2.4
1,093,641	-		MIT1002_00986	0.25	+1.0
1,093,655	+		MIT1002_00986	0.26	+0.4
1,093,655	+		MIT1002_00986	0.26	+0.4
1,093,655	+		MIT1002_00986	0.26	+0.9
1,093,663	-		MIT1002_00986	0.26	+0.2
1,093,663	-		MIT1002_00986	0.26	+0.4
1,093,663	-		MIT1002_00986	0.26	+0.8
1,093,663	-		MIT1002_00986	0.26	+0.3
1,093,663	-		MIT1002_00986	0.26	-0.8
1,093,686	+		MIT1002_00986	0.28	-1.2
1,093,717	+		MIT1002_00986	0.30	+0.7
1,093,774	+		MIT1002_00986	0.34	+1.3
1,093,782	-		MIT1002_00986	0.35	+0.0
1,093,821	+		MIT1002_00986	0.38	+0.6
1,093,829	+		MIT1002_00986	0.38	-0.2
1,093,895	+		MIT1002_00986	0.43	+1.2
1,093,904	-		MIT1002_00986	0.44	-0.4
1,093,907	+		MIT1002_00986	0.44	-0.2
1,093,937	-		MIT1002_00986	0.46	+0.7
1,094,043	+		MIT1002_00986	0.54	-0.6
1,094,054	+		MIT1002_00986	0.55	-0.7
1,094,074	-		MIT1002_00986	0.56	-1.1
1,094,098	-		MIT1002_00986	0.58	+0.7
1,094,154	-		MIT1002_00986	0.62	-0.6
1,094,245	-		MIT1002_00986	0.69	+0.4
1,094,362	+		MIT1002_00986	0.77	+0.3
1,094,362	+		MIT1002_00986	0.77	+1.4
1,094,362	+		MIT1002_00986	0.77	+0.9
1,094,404	-		MIT1002_00986	0.80	+0.2
1,094,539	+				+0.0
1,094,539	+				-0.2
1,094,539	+				-0.6
1,094,547	-				-0.3
1,094,547	-				-0.3
1,094,547	-				+0.7
1,094,547	-				+0.6
1,094,547	-				+0.9
1,094,569	-				-0.5
1,094,643	-				+0.9
1,094,648	+				-0.4
1,094,656	-				-0.5
1,094,656	-				+0.3
1,094,656	-				+1.1
1,094,689	-				+0.6
1,094,859	-		MIT1002_00987	0.11	+0.4
1,095,009	+		MIT1002_00987	0.21	-0.2
1,095,033	+		MIT1002_00987	0.23	-1.3
1,095,107	-		MIT1002_00987	0.27	+1.5
1,095,110	+		MIT1002_00987	0.28	+0.2
1,095,172	+		MIT1002_00987	0.32	+0.5
1,095,174	+		MIT1002_00987	0.32	-1.3
1,095,182	-		MIT1002_00987	0.32	+0.4
1,095,261	-		MIT1002_00987	0.37	-1.5
1,095,261	-		MIT1002_00987	0.37	-0.6
1,095,263	+		MIT1002_00987	0.37	-3.4
1,095,280	+		MIT1002_00987	0.38	+0.6
1,095,313	+		MIT1002_00987	0.41	+0.7
1,095,313	+		MIT1002_00987	0.41	+1.8
1,095,313	+		MIT1002_00987	0.41	-0.9
1,095,358	+		MIT1002_00987	0.43	+1.5
1,095,358	+		MIT1002_00987	0.43	-0.6
1,095,358	+		MIT1002_00987	0.43	-0.2
1,095,358	-		MIT1002_00987	0.43	+0.8
1,095,366	-		MIT1002_00987	0.44	+1.2
1,095,375	-		MIT1002_00987	0.45	-0.2
1,095,400	-		MIT1002_00987	0.46	+0.3
1,095,414	-		MIT1002_00987	0.47	-0.8
1,095,417	+		MIT1002_00987	0.47	-0.9
1,095,417	+		MIT1002_00987	0.47	+0.3
1,095,417	+		MIT1002_00987	0.47	-0.1
1,095,425	-		MIT1002_00987	0.48	+0.1
1,095,438	+		MIT1002_00987	0.49	-0.3
1,095,438	+		MIT1002_00987	0.49	-1.8
1,095,467	+		MIT1002_00987	0.50	-1.2
1,095,469	+		MIT1002_00987	0.51	+0.6
1,095,475	-		MIT1002_00987	0.51	+0.6
1,095,521	+		MIT1002_00987	0.54	+0.3
1,095,544	+		MIT1002_00987	0.55	-0.0
1,095,557	-		MIT1002_00987	0.56	+0.0
1,095,558	-		MIT1002_00987	0.56	-0.9