Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00868 and MIT1002_00869 are separated by 106 nucleotides MIT1002_00869 and MIT1002_00870 are separated by 228 nucleotides MIT1002_00870 and MIT1002_00871 are separated by 130 nucleotides
MIT1002_00868: MIT1002_00868 - Toluene efflux pump outer membrane protein TtgF precursor, at 955,913 to 957,391
_00868
MIT1002_00869: MIT1002_00869 - hypothetical protein, at 957,498 to 957,953
_00869
MIT1002_00870: MIT1002_00870 - Prolyl tripeptidyl peptidase precursor, at 958,182 to 960,308
_00870
MIT1002_00871: MIT1002_00871 - Exopolyphosphatase, at 960,439 to 962,001
_00871
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 957.286 kb on + strand at 957.302 kb on - strand at 957.313 kb on + strand at 957.480 kb on + strand at 957.481 kb on - strand at 957.650 kb on + strand, within MIT1002_00869 at 957.662 kb on + strand, within MIT1002_00869 at 957.786 kb on + strand, within MIT1002_00869 at 957.799 kb on + strand, within MIT1002_00869 at 957.837 kb on + strand, within MIT1002_00869 at 957.897 kb on - strand, within MIT1002_00869 at 957.956 kb on + strand at 957.957 kb on + strand at 957.975 kb on + strand at 957.976 kb on - strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.031 kb on + strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.075 kb on - strand at 958.242 kb on + strand at 958.250 kb on - strand at 958.255 kb on - strand at 958.292 kb on + strand at 958.372 kb on + strand at 958.372 kb on + strand at 958.382 kb on - strand at 958.382 kb on - strand at 958.425 kb on - strand, within MIT1002_00870 at 958.454 kb on + strand, within MIT1002_00870 at 958.541 kb on + strand, within MIT1002_00870 at 958.589 kb on - strand, within MIT1002_00870 at 958.647 kb on - strand, within MIT1002_00870 at 958.830 kb on + strand, within MIT1002_00870 at 959.018 kb on + strand, within MIT1002_00870 at 959.018 kb on + strand, within MIT1002_00870 at 959.049 kb on + strand, within MIT1002_00870 at 959.059 kb on - strand, within MIT1002_00870 at 959.172 kb on - strand, within MIT1002_00870 at 959.263 kb on + strand, within MIT1002_00870 at 959.271 kb on - strand, within MIT1002_00870 at 959.271 kb on - strand, within MIT1002_00870 at 959.271 kb on - strand, within MIT1002_00870 at 959.273 kb on + strand, within MIT1002_00870 at 959.289 kb on + strand, within MIT1002_00870 at 959.289 kb on + strand, within MIT1002_00870 at 959.297 kb on - strand, within MIT1002_00870 at 959.324 kb on + strand, within MIT1002_00870 at 959.329 kb on + strand, within MIT1002_00870 at 959.337 kb on - strand, within MIT1002_00870 at 959.342 kb on - strand, within MIT1002_00870 at 959.373 kb on + strand, within MIT1002_00870 at 959.381 kb on - strand, within MIT1002_00870 at 959.382 kb on + strand, within MIT1002_00870 at 959.388 kb on - strand, within MIT1002_00870 at 959.544 kb on + strand, within MIT1002_00870 at 959.560 kb on - strand, within MIT1002_00870 at 959.562 kb on - strand, within MIT1002_00870 at 959.663 kb on + strand, within MIT1002_00870 at 959.671 kb on - strand, within MIT1002_00870 at 959.678 kb on + strand, within MIT1002_00870 at 959.686 kb on - strand, within MIT1002_00870 at 959.686 kb on - strand, within MIT1002_00870 at 959.710 kb on + strand, within MIT1002_00870 at 959.716 kb on - strand, within MIT1002_00870 at 959.721 kb on - strand, within MIT1002_00870 at 959.751 kb on + strand, within MIT1002_00870 at 959.753 kb on + strand, within MIT1002_00870 at 959.759 kb on - strand, within MIT1002_00870 at 959.774 kb on - strand, within MIT1002_00870 at 959.784 kb on - strand, within MIT1002_00870 at 959.840 kb on + strand, within MIT1002_00870 at 959.884 kb on + strand, within MIT1002_00870 at 959.884 kb on - strand, within MIT1002_00870 at 959.911 kb on - strand, within MIT1002_00870 at 959.960 kb on - strand, within MIT1002_00870 at 960.024 kb on - strand, within MIT1002_00870 at 960.064 kb on - strand, within MIT1002_00870 at 960.073 kb on + strand, within MIT1002_00870 at 960.073 kb on + strand, within MIT1002_00870 at 960.077 kb on - strand, within MIT1002_00870 at 960.081 kb on - strand, within MIT1002_00870 at 960.083 kb on + strand, within MIT1002_00870 at 960.116 kb on + strand at 960.116 kb on + strand at 960.116 kb on + strand at 960.116 kb on + strand at 960.124 kb on - strand at 960.124 kb on - strand at 960.139 kb on - strand at 960.158 kb on + strand at 960.212 kb on - strand at 960.213 kb on - strand at 960.293 kb on + strand at 960.361 kb on - strand at 960.361 kb on - strand at 960.528 kb on + strand at 960.573 kb on + strand at 960.594 kb on + strand at 960.618 kb on + strand, within MIT1002_00871 at 960.626 kb on - strand, within MIT1002_00871 at 960.649 kb on - strand, within MIT1002_00871 at 960.705 kb on + strand, within MIT1002_00871 at 960.713 kb on - strand, within MIT1002_00871 at 960.807 kb on - strand, within MIT1002_00871 at 960.831 kb on + strand, within MIT1002_00871 at 960.913 kb on + strand, within MIT1002_00871 at 960.922 kb on + strand, within MIT1002_00871 at 960.957 kb on + strand, within MIT1002_00871 at 961.087 kb on - strand, within MIT1002_00871 at 961.119 kb on - strand, within MIT1002_00871 at 961.191 kb on + strand, within MIT1002_00871 at 961.284 kb on + strand, within MIT1002_00871 at 961.294 kb on + strand, within MIT1002_00871
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 957,286 + -0.7 957,302 - +0.9 957,313 + -0.5 957,480 + -1.2 957,481 - -0.5 957,650 + MIT1002_00869 0.33 -0.2 957,662 + MIT1002_00869 0.36 +0.7 957,786 + MIT1002_00869 0.63 -0.8 957,799 + MIT1002_00869 0.66 +1.2 957,837 + MIT1002_00869 0.74 -0.6 957,897 - MIT1002_00869 0.88 -1.4 957,956 + -1.2 957,957 + +2.5 957,975 + +2.3 957,976 - +1.3 958,028 + -1.8 958,028 + +0.4 958,028 + +0.6 958,028 + -1.4 958,031 + +0.8 958,036 - -0.7 958,036 - +1.0 958,036 - +2.0 958,036 - -0.1 958,075 - +0.6 958,242 + +0.0 958,250 - +0.4 958,255 - +1.0 958,292 + -0.8 958,372 + +0.0 958,372 + -1.2 958,382 - +0.2 958,382 - -1.1 958,425 - MIT1002_00870 0.11 -1.0 958,454 + MIT1002_00870 0.13 -1.7 958,541 + MIT1002_00870 0.17 +0.8 958,589 - MIT1002_00870 0.19 -0.7 958,647 - MIT1002_00870 0.22 +1.3 958,830 + MIT1002_00870 0.30 +0.7 959,018 + MIT1002_00870 0.39 +0.2 959,018 + MIT1002_00870 0.39 +1.2 959,049 + MIT1002_00870 0.41 +3.1 959,059 - MIT1002_00870 0.41 -1.6 959,172 - MIT1002_00870 0.47 +0.6 959,263 + MIT1002_00870 0.51 +0.7 959,271 - MIT1002_00870 0.51 -2.2 959,271 - MIT1002_00870 0.51 +0.7 959,271 - MIT1002_00870 0.51 -0.0 959,273 + MIT1002_00870 0.51 +0.3 959,289 + MIT1002_00870 0.52 -1.3 959,289 + MIT1002_00870 0.52 +1.2 959,297 - MIT1002_00870 0.52 -0.2 959,324 + MIT1002_00870 0.54 +0.1 959,329 + MIT1002_00870 0.54 -1.0 959,337 - MIT1002_00870 0.54 +0.7 959,342 - MIT1002_00870 0.55 -1.5 959,373 + MIT1002_00870 0.56 -0.7 959,381 - MIT1002_00870 0.56 +0.0 959,382 + MIT1002_00870 0.56 +0.5 959,388 - MIT1002_00870 0.57 -1.0 959,544 + MIT1002_00870 0.64 -1.2 959,560 - MIT1002_00870 0.65 -0.4 959,562 - MIT1002_00870 0.65 -0.9 959,663 + MIT1002_00870 0.70 -0.8 959,671 - MIT1002_00870 0.70 -2.2 959,678 + MIT1002_00870 0.70 +0.1 959,686 - MIT1002_00870 0.71 +0.5 959,686 - MIT1002_00870 0.71 +2.6 959,710 + MIT1002_00870 0.72 +0.1 959,716 - MIT1002_00870 0.72 +0.2 959,721 - MIT1002_00870 0.72 -0.6 959,751 + MIT1002_00870 0.74 +0.9 959,753 + MIT1002_00870 0.74 -0.2 959,759 - MIT1002_00870 0.74 -0.2 959,774 - MIT1002_00870 0.75 +0.6 959,784 - MIT1002_00870 0.75 +1.4 959,840 + MIT1002_00870 0.78 +1.3 959,884 + MIT1002_00870 0.80 +1.4 959,884 - MIT1002_00870 0.80 +0.8 959,911 - MIT1002_00870 0.81 -0.2 959,960 - MIT1002_00870 0.84 +0.2 960,024 - MIT1002_00870 0.87 -0.2 960,064 - MIT1002_00870 0.88 -0.2 960,073 + MIT1002_00870 0.89 +0.2 960,073 + MIT1002_00870 0.89 +1.2 960,077 - MIT1002_00870 0.89 +0.0 960,081 - MIT1002_00870 0.89 +0.7 960,083 + MIT1002_00870 0.89 +3.4 960,116 + +0.3 960,116 + +0.5 960,116 + -1.1 960,116 + -0.4 960,124 - +0.3 960,124 - +1.6 960,139 - -0.8 960,158 + +0.8 960,212 - -0.4 960,213 - -0.2 960,293 + +1.3 960,361 - -0.6 960,361 - +0.8 960,528 + +0.2 960,573 + -0.2 960,594 + -0.5 960,618 + MIT1002_00871 0.11 -0.7 960,626 - MIT1002_00871 0.12 -0.5 960,649 - MIT1002_00871 0.13 -0.1 960,705 + MIT1002_00871 0.17 -2.0 960,713 - MIT1002_00871 0.18 -1.0 960,807 - MIT1002_00871 0.24 -0.3 960,831 + MIT1002_00871 0.25 -0.6 960,913 + MIT1002_00871 0.30 -1.3 960,922 + MIT1002_00871 0.31 -0.3 960,957 + MIT1002_00871 0.33 +0.4 961,087 - MIT1002_00871 0.41 +0.0 961,119 - MIT1002_00871 0.44 +0.0 961,191 + MIT1002_00871 0.48 -1.1 961,284 + MIT1002_00871 0.54 -0.6 961,294 + MIT1002_00871 0.55 -1.7
Or see this region's nucleotide sequence