Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00857 and MIT1002_00858 are separated by 336 nucleotides MIT1002_00858 and MIT1002_00859 are separated by 72 nucleotides MIT1002_00859 and MIT1002_00860 are separated by 240 nucleotides
MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206
_00857
MIT1002_00858: MIT1002_00858 - Exonuclease, at 942,543 to 943,040
_00858
MIT1002_00859: MIT1002_00859 - hypothetical protein, at 943,113 to 943,583
_00859
MIT1002_00860: MIT1002_00860 - S-adenosylmethionine synthase, at 943,824 to 944,969
_00860
Position (kb) 943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 942.143 kb on - strand at 942.212 kb on - strand at 942.237 kb on - strand at 942.256 kb on + strand at 942.349 kb on - strand at 942.364 kb on + strand at 942.380 kb on + strand at 942.400 kb on + strand at 942.596 kb on - strand, within MIT1002_00858 at 942.610 kb on - strand, within MIT1002_00858 at 942.640 kb on + strand, within MIT1002_00858 at 942.715 kb on + strand, within MIT1002_00858 at 942.715 kb on + strand, within MIT1002_00858 at 942.718 kb on - strand, within MIT1002_00858 at 942.723 kb on - strand, within MIT1002_00858 at 942.728 kb on + strand, within MIT1002_00858 at 942.728 kb on - strand, within MIT1002_00858 at 942.728 kb on - strand, within MIT1002_00858 at 942.823 kb on + strand, within MIT1002_00858 at 942.837 kb on - strand, within MIT1002_00858 at 942.853 kb on - strand, within MIT1002_00858 at 942.880 kb on + strand, within MIT1002_00858 at 942.928 kb on + strand, within MIT1002_00858 at 943.100 kb on + strand at 943.103 kb on - strand at 943.194 kb on + strand, within MIT1002_00859 at 943.194 kb on + strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859 at 943.224 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.336 kb on + strand, within MIT1002_00859 at 943.344 kb on - strand, within MIT1002_00859 at 943.367 kb on - strand, within MIT1002_00859 at 943.381 kb on + strand, within MIT1002_00859 at 943.387 kb on + strand, within MIT1002_00859 at 943.387 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.486 kb on + strand, within MIT1002_00859 at 943.486 kb on + strand, within MIT1002_00859 at 943.489 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.530 kb on - strand, within MIT1002_00859 at 943.599 kb on + strand at 943.636 kb on - strand at 943.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 942,143 - +0.5 942,212 - -0.7 942,237 - +0.7 942,256 + -3.1 942,349 - -0.5 942,364 + -0.1 942,380 + +0.9 942,400 + +0.7 942,596 - MIT1002_00858 0.11 -0.3 942,610 - MIT1002_00858 0.13 -1.2 942,640 + MIT1002_00858 0.19 +0.2 942,715 + MIT1002_00858 0.35 -1.2 942,715 + MIT1002_00858 0.35 +0.3 942,718 - MIT1002_00858 0.35 +1.9 942,723 - MIT1002_00858 0.36 -1.4 942,728 + MIT1002_00858 0.37 -1.5 942,728 - MIT1002_00858 0.37 -0.4 942,728 - MIT1002_00858 0.37 -0.5 942,823 + MIT1002_00858 0.56 -0.1 942,837 - MIT1002_00858 0.59 +1.3 942,853 - MIT1002_00858 0.62 +0.7 942,880 + MIT1002_00858 0.68 +1.1 942,928 + MIT1002_00858 0.77 -0.3 943,100 + +3.2 943,103 - -1.7 943,194 + MIT1002_00859 0.17 +0.4 943,194 + MIT1002_00859 0.17 -1.4 943,202 - MIT1002_00859 0.19 +0.4 943,202 - MIT1002_00859 0.19 +1.6 943,224 + MIT1002_00859 0.24 -0.5 943,312 + MIT1002_00859 0.42 -0.3 943,312 + MIT1002_00859 0.42 -3.1 943,312 + MIT1002_00859 0.42 -0.5 943,312 + MIT1002_00859 0.42 -1.4 943,312 + MIT1002_00859 0.42 +1.3 943,336 + MIT1002_00859 0.47 -0.1 943,344 - MIT1002_00859 0.49 -0.7 943,367 - MIT1002_00859 0.54 -0.5 943,381 + MIT1002_00859 0.57 -0.1 943,387 + MIT1002_00859 0.58 +1.1 943,387 + MIT1002_00859 0.58 +0.8 943,481 + MIT1002_00859 0.78 +0.6 943,481 + MIT1002_00859 0.78 -2.6 943,481 + MIT1002_00859 0.78 -0.5 943,486 + MIT1002_00859 0.79 +1.3 943,486 + MIT1002_00859 0.79 -0.3 943,489 - MIT1002_00859 0.80 +0.6 943,494 - MIT1002_00859 0.81 -0.3 943,494 - MIT1002_00859 0.81 -0.4 943,494 - MIT1002_00859 0.81 -0.2 943,530 - MIT1002_00859 0.89 -0.6 943,599 + +1.3 943,636 - -0.4 943,844 + -0.3
Or see this region's nucleotide sequence