Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00596

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00595 and MIT1002_00596 are separated by 178 nucleotidesMIT1002_00596 and MIT1002_00597 are separated by 330 nucleotides MIT1002_00595: MIT1002_00595 - hypothetical protein, at 645,193 to 645,717 _00595 MIT1002_00596: MIT1002_00596 - putative toxin-antitoxin system antitoxin component, at 645,896 to 646,321 _00596 MIT1002_00597: MIT1002_00597 - Site-specific recombinase XerD, at 646,652 to 648,193 _00597 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1 2 3at 644.933 kb on - strandat 644.986 kb on - strandat 644.986 kb on - strandat 644.993 kb on - strandat 645.050 kb on + strandat 645.058 kb on - strandat 645.058 kb on - strandat 645.196 kb on - strandat 645.234 kb on + strandat 645.273 kb on + strand, within MIT1002_00595at 645.273 kb on + strand, within MIT1002_00595at 645.291 kb on + strand, within MIT1002_00595at 645.299 kb on + strand, within MIT1002_00595at 645.300 kb on - strand, within MIT1002_00595at 645.307 kb on - strand, within MIT1002_00595at 645.385 kb on + strand, within MIT1002_00595at 645.388 kb on - strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.403 kb on - strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.413 kb on - strand, within MIT1002_00595at 645.430 kb on - strand, within MIT1002_00595at 645.493 kb on + strand, within MIT1002_00595at 645.501 kb on - strand, within MIT1002_00595at 645.589 kb on + strand, within MIT1002_00595at 645.605 kb on + strand, within MIT1002_00595at 645.640 kb on + strand, within MIT1002_00595at 645.648 kb on - strand, within MIT1002_00595at 645.699 kb on + strandat 645.706 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.719 kb on - strandat 645.719 kb on - strandat 645.746 kb on + strandat 645.754 kb on - strandat 645.754 kb on - strandat 645.781 kb on + strandat 645.822 kb on + strandat 645.858 kb on - strandat 645.942 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.996 kb on - strand, within MIT1002_00596at 645.998 kb on + strand, within MIT1002_00596at 646.006 kb on - strand, within MIT1002_00596at 646.051 kb on + strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.108 kb on - strand, within MIT1002_00596at 646.110 kb on - strand, within MIT1002_00596at 646.120 kb on - strand, within MIT1002_00596at 646.123 kb on - strand, within MIT1002_00596at 646.164 kb on + strand, within MIT1002_00596at 646.187 kb on + strand, within MIT1002_00596at 646.245 kb on + strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.271 kb on - strand, within MIT1002_00596at 646.303 kb on + strandat 646.387 kb on + strandat 646.387 kb on + strandat 646.394 kb on - strandat 646.458 kb on + strandat 646.468 kb on + strandat 646.490 kb on + strandat 646.491 kb on + strandat 646.501 kb on + strandat 646.509 kb on - strandat 646.550 kb on + strandat 646.550 kb on + strandat 646.575 kb on + strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.590 kb on + strandat 646.598 kb on - strandat 646.687 kb on + strandat 646.687 kb on - strandat 646.702 kb on - strandat 646.711 kb on + strandat 646.713 kb on + strandat 646.720 kb on - strandat 646.818 kb on - strand, within MIT1002_00597at 646.819 kb on - strand, within MIT1002_00597at 646.858 kb on - strand, within MIT1002_00597at 646.918 kb on + strand, within MIT1002_00597at 646.920 kb on + strand, within MIT1002_00597at 646.958 kb on + strand, within MIT1002_00597at 646.969 kb on + strand, within MIT1002_00597at 647.009 kb on + strand, within MIT1002_00597at 647.087 kb on + strand, within MIT1002_00597at 647.161 kb on - strand, within MIT1002_00597at 647.176 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.279 kb on - strand, within MIT1002_00597at 647.287 kb on + strand, within MIT1002_00597at 647.304 kb on + strand, within MIT1002_00597

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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644,933 - -0.6
644,986 - -1.5
644,986 - -1.8
644,993 - -0.7
645,050 + +0.9
645,058 - -0.9
645,058 - +0.3
645,196 - +0.2
645,234 + +0.0
645,273 + MIT1002_00595 0.15 +0.6
645,273 + MIT1002_00595 0.15 -0.6
645,291 + MIT1002_00595 0.19 +0.6
645,299 + MIT1002_00595 0.20 -1.1
645,300 - MIT1002_00595 0.20 -1.5
645,307 - MIT1002_00595 0.22 +3.1
645,385 + MIT1002_00595 0.37 -2.4
645,388 - MIT1002_00595 0.37 +2.3
645,390 + MIT1002_00595 0.38 +0.6
645,390 + MIT1002_00595 0.38 -0.2
645,390 + MIT1002_00595 0.38 -1.3
645,398 - MIT1002_00595 0.39 -1.0
645,398 - MIT1002_00595 0.39 -0.1
645,403 - MIT1002_00595 0.40 -0.4
645,405 + MIT1002_00595 0.40 +2.0
645,405 + MIT1002_00595 0.40 -1.0
645,413 - MIT1002_00595 0.42 -1.0
645,430 - MIT1002_00595 0.45 -0.3
645,493 + MIT1002_00595 0.57 +1.0
645,501 - MIT1002_00595 0.59 +0.3
645,589 + MIT1002_00595 0.75 +0.3
645,605 + MIT1002_00595 0.78 -0.1
645,640 + MIT1002_00595 0.85 -0.4
645,648 - MIT1002_00595 0.87 +0.7
645,699 + -2.2
645,706 + +0.1
645,711 + +0.8
645,711 + -1.1
645,711 + +0.5
645,719 - +1.5
645,719 - +0.7
645,746 + -1.4
645,754 - -0.7
645,754 - -1.3
645,781 + -0.6
645,822 + +0.2
645,858 - -0.3
645,942 + MIT1002_00596 0.11 +0.2
645,988 + MIT1002_00596 0.22 -0.6
645,988 + MIT1002_00596 0.22 -1.9
645,988 + MIT1002_00596 0.22 -1.6
645,996 - MIT1002_00596 0.23 +2.3
645,998 + MIT1002_00596 0.24 +0.2
646,006 - MIT1002_00596 0.26 +0.6
646,051 + MIT1002_00596 0.36 +1.1
646,072 - MIT1002_00596 0.41 +2.0
646,072 - MIT1002_00596 0.41 +0.5
646,108 - MIT1002_00596 0.50 +1.8
646,110 - MIT1002_00596 0.50 +1.6
646,120 - MIT1002_00596 0.53 -0.3
646,123 - MIT1002_00596 0.53 -1.8
646,164 + MIT1002_00596 0.63 +0.2
646,187 + MIT1002_00596 0.68 +1.2
646,245 + MIT1002_00596 0.82 -1.9
646,253 - MIT1002_00596 0.84 -0.0
646,253 - MIT1002_00596 0.84 +0.0
646,263 + MIT1002_00596 0.86 -0.9
646,263 + MIT1002_00596 0.86 -0.0
646,271 - MIT1002_00596 0.88 -0.2
646,303 + -0.9
646,387 + -0.6
646,387 + +0.6
646,394 - +1.1
646,458 + +1.5
646,468 + +1.7
646,490 + +1.8
646,491 + +1.5
646,501 + +0.2
646,509 - +0.5
646,550 + +0.3
646,550 + +1.2
646,575 + +1.8
646,583 - +0.6
646,583 - +0.4
646,583 - -1.0
646,583 - -1.2
646,583 - -0.1
646,590 + +1.9
646,598 - -0.3
646,687 + +2.2
646,687 - -0.1
646,702 - +1.1
646,711 + -0.4
646,713 + +0.1
646,720 - -1.3
646,818 - MIT1002_00597 0.11 -0.2
646,819 - MIT1002_00597 0.11 -0.3
646,858 - MIT1002_00597 0.13 -0.1
646,918 + MIT1002_00597 0.17 -1.4
646,920 + MIT1002_00597 0.17 +0.3
646,958 + MIT1002_00597 0.20 +1.3
646,969 + MIT1002_00597 0.21 -1.0
647,009 + MIT1002_00597 0.23 +0.2
647,087 + MIT1002_00597 0.28 -0.7
647,161 - MIT1002_00597 0.33 +0.0
647,176 + MIT1002_00597 0.34 -0.1
647,261 + MIT1002_00597 0.39 +0.1
647,261 + MIT1002_00597 0.39 +0.2
647,261 + MIT1002_00597 0.39 +0.5
647,261 + MIT1002_00597 0.39 -1.0
647,261 + MIT1002_00597 0.39 +1.4
647,261 + MIT1002_00597 0.39 -0.1
647,261 + MIT1002_00597 0.39 +0.1
647,269 - MIT1002_00597 0.40 +0.1
647,269 - MIT1002_00597 0.40 +1.0
647,269 - MIT1002_00597 0.40 -0.0
647,269 - MIT1002_00597 0.40 +2.5
647,269 - MIT1002_00597 0.40 +0.9
647,279 - MIT1002_00597 0.41 +0.8
647,287 + MIT1002_00597 0.41 +1.0
647,304 + MIT1002_00597 0.42 -1.5

Or see this region's nucleotide sequence