Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00502

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00500 and MIT1002_00501 are separated by 147 nucleotidesMIT1002_00501 and MIT1002_00502 are separated by 233 nucleotidesMIT1002_00502 and MIT1002_00503 are separated by 273 nucleotides MIT1002_00500: MIT1002_00500 - putative PEP-CTERM system TPR-repeat lipoprotein, at 543,882 to 545,450 _00500 MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059 _00501 MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670 _00502 MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662 _00503 Position (kb) 546 547Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 545.296 kb on - strandat 545.296 kb on - strandat 545.416 kb on + strandat 545.477 kb on - strandat 545.669 kb on + strand, within MIT1002_00501at 545.780 kb on - strand, within MIT1002_00501at 545.801 kb on - strand, within MIT1002_00501at 545.837 kb on - strand, within MIT1002_00501at 545.993 kb on + strand, within MIT1002_00501at 545.998 kb on - strand, within MIT1002_00501at 546.036 kb on - strandat 546.106 kb on + strandat 546.179 kb on + strandat 546.285 kb on + strandat 546.286 kb on + strandat 546.287 kb on + strandat 546.295 kb on - strandat 546.295 kb on - strandat 546.402 kb on - strand, within MIT1002_00502at 546.417 kb on - strand, within MIT1002_00502at 546.510 kb on + strand, within MIT1002_00502at 546.510 kb on - strand, within MIT1002_00502at 546.523 kb on + strand, within MIT1002_00502at 546.610 kb on - strand, within MIT1002_00502at 546.671 kb on + strandat 546.892 kb on - strandat 546.903 kb on - strandat 546.915 kb on + strandat 546.917 kb on + strandat 546.932 kb on + strandat 546.965 kb on + strandat 547.020 kb on - strandat 547.071 kb on - strandat 547.117 kb on - strand, within MIT1002_00503at 547.129 kb on - strand, within MIT1002_00503at 547.154 kb on + strand, within MIT1002_00503at 547.162 kb on - strand, within MIT1002_00503at 547.162 kb on - strand, within MIT1002_00503at 547.164 kb on + strand, within MIT1002_00503at 547.172 kb on - strand, within MIT1002_00503at 547.172 kb on - strand, within MIT1002_00503at 547.196 kb on + strand, within MIT1002_00503at 547.196 kb on - strand, within MIT1002_00503at 547.231 kb on - strand, within MIT1002_00503at 547.297 kb on + strand, within MIT1002_00503at 547.305 kb on + strand, within MIT1002_00503at 547.313 kb on - strand, within MIT1002_00503at 547.358 kb on - strand, within MIT1002_00503at 547.483 kb on + strand, within MIT1002_00503at 547.518 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.560 kb on - strand, within MIT1002_00503at 547.566 kb on + strand, within MIT1002_00503at 547.569 kb on - strand, within MIT1002_00503at 547.576 kb on + strand, within MIT1002_00503at 547.579 kb on - strand, within MIT1002_00503at 547.584 kb on - strand, within MIT1002_00503at 547.639 kb on + strand, within MIT1002_00503at 547.649 kb on + strand, within MIT1002_00503

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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545,296 - -0.3
545,296 - -0.5
545,416 + -0.8
545,477 - -0.8
545,669 + MIT1002_00501 0.15 +0.3
545,780 - MIT1002_00501 0.39 -0.8
545,801 - MIT1002_00501 0.44 -0.2
545,837 - MIT1002_00501 0.52 +0.7
545,993 + MIT1002_00501 0.85 -0.3
545,998 - MIT1002_00501 0.87 -0.9
546,036 - -1.3
546,106 + +0.7
546,179 + -3.3
546,285 + -0.4
546,286 + +2.3
546,287 + -2.1
546,295 - +1.1
546,295 - -0.9
546,402 - MIT1002_00502 0.29 -0.5
546,417 - MIT1002_00502 0.33 -1.3
546,510 + MIT1002_00502 0.57 -0.2
546,510 - MIT1002_00502 0.57 +0.1
546,523 + MIT1002_00502 0.61 -0.5
546,610 - MIT1002_00502 0.84 -0.3
546,671 + +2.1
546,892 - -1.1
546,903 - -1.5
546,915 + -3.1
546,917 + -3.2
546,932 + -0.6
546,965 + -4.1
547,020 - -6.9
547,071 - -1.2
547,117 - MIT1002_00503 0.10 -1.9
547,129 - MIT1002_00503 0.11 -1.6
547,154 + MIT1002_00503 0.12 -0.5
547,162 - MIT1002_00503 0.13 -2.8
547,162 - MIT1002_00503 0.13 -2.7
547,164 + MIT1002_00503 0.13 -2.9
547,172 - MIT1002_00503 0.13 -5.1
547,172 - MIT1002_00503 0.13 -0.2
547,196 + MIT1002_00503 0.15 -5.3
547,196 - MIT1002_00503 0.15 -4.0
547,231 - MIT1002_00503 0.17 -4.5
547,297 + MIT1002_00503 0.21 -2.1
547,305 + MIT1002_00503 0.21 -3.3
547,313 - MIT1002_00503 0.21 -5.4
547,358 - MIT1002_00503 0.24 -2.2
547,483 + MIT1002_00503 0.31 -3.1
547,518 + MIT1002_00503 0.33 -1.5
547,552 + MIT1002_00503 0.35 -2.0
547,552 + MIT1002_00503 0.35 -2.0
547,552 + MIT1002_00503 0.35 -2.0
547,560 - MIT1002_00503 0.36 -2.0
547,566 + MIT1002_00503 0.36 -3.4
547,569 - MIT1002_00503 0.36 -0.2
547,576 + MIT1002_00503 0.37 -4.5
547,579 - MIT1002_00503 0.37 -2.8
547,584 - MIT1002_00503 0.37 -2.4
547,639 + MIT1002_00503 0.40 -3.5
547,649 + MIT1002_00503 0.41 -7.5

Or see this region's nucleotide sequence