Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00479

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00478 and MIT1002_00479 are separated by 64 nucleotidesMIT1002_00479 and MIT1002_00480 are separated by 152 nucleotidesMIT1002_00480 and MIT1002_00481 are separated by 115 nucleotides MIT1002_00478: MIT1002_00478 - Sensor protein CpxA, at 522,057 to 523,418 _00478 MIT1002_00479: MIT1002_00479 - lysophospholipase L2, at 523,483 to 524,460 _00479 MIT1002_00480: MIT1002_00480 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 524,613 to 525,077 _00480 MIT1002_00481: MIT1002_00481 - Macrolide-specific efflux protein MacA precursor, at 525,193 to 526,428 _00481 Position (kb) 523 524 525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 522.514 kb on + strand, within MIT1002_00478at 522.548 kb on - strand, within MIT1002_00478at 522.577 kb on + strand, within MIT1002_00478at 522.585 kb on + strand, within MIT1002_00478at 522.632 kb on - strand, within MIT1002_00478at 522.683 kb on + strand, within MIT1002_00478at 522.704 kb on + strand, within MIT1002_00478at 522.708 kb on + strand, within MIT1002_00478at 522.709 kb on + strand, within MIT1002_00478at 522.777 kb on - strand, within MIT1002_00478at 522.805 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.824 kb on - strand, within MIT1002_00478at 522.824 kb on - strand, within MIT1002_00478at 522.870 kb on - strand, within MIT1002_00478at 522.884 kb on - strand, within MIT1002_00478at 522.906 kb on - strand, within MIT1002_00478at 522.925 kb on + strand, within MIT1002_00478at 523.005 kb on + strand, within MIT1002_00478at 523.015 kb on + strand, within MIT1002_00478at 523.057 kb on - strand, within MIT1002_00478at 523.083 kb on + strand, within MIT1002_00478at 523.113 kb on + strand, within MIT1002_00478at 523.122 kb on + strand, within MIT1002_00478at 523.187 kb on + strand, within MIT1002_00478at 523.187 kb on + strand, within MIT1002_00478at 523.187 kb on + strand, within MIT1002_00478at 523.187 kb on + strand, within MIT1002_00478at 523.190 kb on - strand, within MIT1002_00478at 523.195 kb on - strand, within MIT1002_00478at 523.195 kb on - strand, within MIT1002_00478at 523.195 kb on - strand, within MIT1002_00478at 523.195 kb on - strand, within MIT1002_00478at 523.221 kb on + strand, within MIT1002_00478at 523.221 kb on + strand, within MIT1002_00478at 523.228 kb on + strand, within MIT1002_00478at 523.229 kb on - strand, within MIT1002_00478at 523.267 kb on + strand, within MIT1002_00478at 523.275 kb on - strand, within MIT1002_00478at 523.299 kb on + strandat 523.305 kb on + strandat 523.305 kb on + strandat 523.305 kb on + strandat 523.305 kb on + strandat 523.305 kb on + strandat 523.305 kb on + strandat 523.311 kb on + strandat 523.313 kb on - strandat 523.313 kb on - strandat 523.392 kb on - strandat 523.469 kb on + strandat 523.614 kb on + strand, within MIT1002_00479at 523.648 kb on - strand, within MIT1002_00479at 523.652 kb on + strand, within MIT1002_00479at 523.738 kb on - strand, within MIT1002_00479at 523.744 kb on + strand, within MIT1002_00479at 523.744 kb on + strand, within MIT1002_00479at 523.744 kb on + strand, within MIT1002_00479at 523.744 kb on + strand, within MIT1002_00479at 523.744 kb on + strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.752 kb on - strand, within MIT1002_00479at 523.764 kb on + strand, within MIT1002_00479at 523.876 kb on - strand, within MIT1002_00479at 523.928 kb on - strand, within MIT1002_00479at 524.129 kb on - strand, within MIT1002_00479at 524.137 kb on + strand, within MIT1002_00479at 524.145 kb on - strand, within MIT1002_00479at 524.262 kb on + strand, within MIT1002_00479at 524.280 kb on - strand, within MIT1002_00479at 524.304 kb on - strand, within MIT1002_00479at 524.419 kb on - strandat 524.524 kb on + strandat 524.538 kb on + strandat 524.538 kb on + strandat 524.546 kb on - strandat 524.590 kb on + strandat 524.622 kb on + strandat 524.671 kb on - strand, within MIT1002_00480at 524.754 kb on + strand, within MIT1002_00480at 524.762 kb on - strand, within MIT1002_00480at 524.818 kb on + strand, within MIT1002_00480at 524.870 kb on - strand, within MIT1002_00480at 524.870 kb on - strand, within MIT1002_00480at 524.949 kb on - strand, within MIT1002_00480at 524.951 kb on - strand, within MIT1002_00480at 524.956 kb on + strand, within MIT1002_00480at 524.956 kb on + strand, within MIT1002_00480at 524.956 kb on + strand, within MIT1002_00480at 524.956 kb on + strand, within MIT1002_00480at 524.961 kb on + strand, within MIT1002_00480at 524.964 kb on - strand, within MIT1002_00480at 525.256 kb on - strandat 525.259 kb on + strandat 525.266 kb on - strandat 525.280 kb on - strandat 525.306 kb on + strandat 525.325 kb on + strand, within MIT1002_00481at 525.327 kb on + strand, within MIT1002_00481at 525.333 kb on - strand, within MIT1002_00481at 525.335 kb on - strand, within MIT1002_00481at 525.335 kb on - strand, within MIT1002_00481at 525.335 kb on - strand, within MIT1002_00481at 525.404 kb on + strand, within MIT1002_00481at 525.404 kb on + strand, within MIT1002_00481at 525.409 kb on + strand, within MIT1002_00481at 525.410 kb on - strand, within MIT1002_00481at 525.414 kb on + strand, within MIT1002_00481at 525.422 kb on - strand, within MIT1002_00481at 525.439 kb on - strand, within MIT1002_00481at 525.439 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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522,514 + MIT1002_00478 0.34 -0.2
522,548 - MIT1002_00478 0.36 +2.2
522,577 + MIT1002_00478 0.38 +0.3
522,585 + MIT1002_00478 0.39 +1.7
522,632 - MIT1002_00478 0.42 +0.7
522,683 + MIT1002_00478 0.46 -1.3
522,704 + MIT1002_00478 0.48 +0.2
522,708 + MIT1002_00478 0.48 -0.5
522,709 + MIT1002_00478 0.48 -0.6
522,777 - MIT1002_00478 0.53 -1.6
522,805 + MIT1002_00478 0.55 -0.4
522,816 + MIT1002_00478 0.56 -3.8
522,816 + MIT1002_00478 0.56 -1.2
522,816 + MIT1002_00478 0.56 +1.7
522,824 - MIT1002_00478 0.56 -1.0
522,824 - MIT1002_00478 0.56 +0.7
522,870 - MIT1002_00478 0.60 -0.1
522,884 - MIT1002_00478 0.61 -0.9
522,906 - MIT1002_00478 0.62 +0.1
522,925 + MIT1002_00478 0.64 +0.5
523,005 + MIT1002_00478 0.70 -2.4
523,015 + MIT1002_00478 0.70 -0.7
523,057 - MIT1002_00478 0.73 -1.4
523,083 + MIT1002_00478 0.75 -0.7
523,113 + MIT1002_00478 0.78 +1.2
523,122 + MIT1002_00478 0.78 -0.6
523,187 + MIT1002_00478 0.83 +1.8
523,187 + MIT1002_00478 0.83 -0.3
523,187 + MIT1002_00478 0.83 -0.1
523,187 + MIT1002_00478 0.83 +1.4
523,190 - MIT1002_00478 0.83 -2.2
523,195 - MIT1002_00478 0.84 +1.4
523,195 - MIT1002_00478 0.84 +0.3
523,195 - MIT1002_00478 0.84 -0.3
523,195 - MIT1002_00478 0.84 +0.9
523,221 + MIT1002_00478 0.85 -1.2
523,221 + MIT1002_00478 0.85 +0.7
523,228 + MIT1002_00478 0.86 -0.2
523,229 - MIT1002_00478 0.86 -0.6
523,267 + MIT1002_00478 0.89 -0.2
523,275 - MIT1002_00478 0.89 -1.8
523,299 + -1.6
523,305 + +0.8
523,305 + +0.7
523,305 + +0.7
523,305 + +1.0
523,305 + +0.6
523,305 + +0.7
523,311 + +0.1
523,313 - +1.2
523,313 - +0.3
523,392 - +10.8
523,469 + +0.5
523,614 + MIT1002_00479 0.13 -0.8
523,648 - MIT1002_00479 0.17 -1.6
523,652 + MIT1002_00479 0.17 +0.1
523,738 - MIT1002_00479 0.26 -0.3
523,744 + MIT1002_00479 0.27 -2.3
523,744 + MIT1002_00479 0.27 +1.7
523,744 + MIT1002_00479 0.27 -2.2
523,744 + MIT1002_00479 0.27 -0.7
523,744 + MIT1002_00479 0.27 +1.5
523,752 - MIT1002_00479 0.28 -0.7
523,752 - MIT1002_00479 0.28 -0.8
523,752 - MIT1002_00479 0.28 -0.8
523,752 - MIT1002_00479 0.28 -0.2
523,752 - MIT1002_00479 0.28 +0.3
523,752 - MIT1002_00479 0.28 -1.6
523,752 - MIT1002_00479 0.28 +0.8
523,752 - MIT1002_00479 0.28 -2.6
523,752 - MIT1002_00479 0.28 +0.1
523,752 - MIT1002_00479 0.28 +0.6
523,764 + MIT1002_00479 0.29 +0.1
523,876 - MIT1002_00479 0.40 -0.3
523,928 - MIT1002_00479 0.46 +0.6
524,129 - MIT1002_00479 0.66 -1.4
524,137 + MIT1002_00479 0.67 -0.2
524,145 - MIT1002_00479 0.68 +0.7
524,262 + MIT1002_00479 0.80 +0.2
524,280 - MIT1002_00479 0.81 +0.1
524,304 - MIT1002_00479 0.84 +1.7
524,419 - -0.4
524,524 + -3.6
524,538 + -0.2
524,538 + +1.2
524,546 - +0.6
524,590 + -0.2
524,622 + +1.5
524,671 - MIT1002_00480 0.12 -0.5
524,754 + MIT1002_00480 0.30 +0.0
524,762 - MIT1002_00480 0.32 +2.2
524,818 + MIT1002_00480 0.44 -1.2
524,870 - MIT1002_00480 0.55 +0.1
524,870 - MIT1002_00480 0.55 +0.3
524,949 - MIT1002_00480 0.72 -1.3
524,951 - MIT1002_00480 0.73 +0.3
524,956 + MIT1002_00480 0.74 +1.5
524,956 + MIT1002_00480 0.74 +2.1
524,956 + MIT1002_00480 0.74 -1.2
524,956 + MIT1002_00480 0.74 -0.3
524,961 + MIT1002_00480 0.75 -0.0
524,964 - MIT1002_00480 0.75 +1.0
525,256 - +0.4
525,259 + +0.8
525,266 - -2.5
525,280 - -1.4
525,306 + +0.3
525,325 + MIT1002_00481 0.11 +0.1
525,327 + MIT1002_00481 0.11 +0.7
525,333 - MIT1002_00481 0.11 +0.2
525,335 - MIT1002_00481 0.11 -1.1
525,335 - MIT1002_00481 0.11 -0.2
525,335 - MIT1002_00481 0.11 -1.3
525,404 + MIT1002_00481 0.17 +0.3
525,404 + MIT1002_00481 0.17 -0.1
525,409 + MIT1002_00481 0.17 -1.2
525,410 - MIT1002_00481 0.18 -0.9
525,414 + MIT1002_00481 0.18 +0.4
525,422 - MIT1002_00481 0.19 -1.0
525,439 - MIT1002_00481 0.20 +0.8
525,439 - MIT1002_00481 0.20 -0.6
525,458 - MIT1002_00481 0.21 +1.5
525,458 - MIT1002_00481 0.21 +1.3
525,458 - MIT1002_00481 0.21 +1.1
525,458 - MIT1002_00481 0.21 -0.4

Or see this region's nucleotide sequence