Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00166 and MIT1002_00167 are separated by 2 nucleotides MIT1002_00167 and MIT1002_00168 are separated by 71 nucleotides MIT1002_00168 and MIT1002_00169 are separated by 311 nucleotides
MIT1002_00166: MIT1002_00166 - S1/P1 Nuclease, at 181,810 to 182,619
_00166
MIT1002_00167: MIT1002_00167 - putative aromatic acid decarboxylase, at 182,622 to 183,254
_00167
MIT1002_00168: MIT1002_00168 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 183,326 to 184,684
_00168
MIT1002_00169: MIT1002_00169 - Fructose-1,6-bisphosphatase class 1, at 184,996 to 185,973
_00169
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 182.351 kb on + strand, within MIT1002_00166 at 182.359 kb on + strand, within MIT1002_00166 at 182.359 kb on + strand, within MIT1002_00166 at 182.405 kb on - strand, within MIT1002_00166 at 182.415 kb on - strand, within MIT1002_00166 at 182.469 kb on - strand, within MIT1002_00166 at 182.563 kb on - strand at 182.578 kb on + strand at 182.628 kb on - strand at 183.306 kb on - strand at 183.460 kb on + strand at 183.460 kb on - strand at 183.472 kb on + strand, within MIT1002_00168 at 183.478 kb on - strand, within MIT1002_00168 at 183.478 kb on - strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.515 kb on + strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.523 kb on - strand, within MIT1002_00168 at 183.545 kb on - strand, within MIT1002_00168 at 183.631 kb on + strand, within MIT1002_00168 at 183.659 kb on - strand, within MIT1002_00168 at 183.800 kb on + strand, within MIT1002_00168 at 183.800 kb on + strand, within MIT1002_00168 at 183.800 kb on + strand, within MIT1002_00168 at 183.808 kb on - strand, within MIT1002_00168 at 183.840 kb on + strand, within MIT1002_00168 at 183.841 kb on - strand, within MIT1002_00168 at 183.854 kb on + strand, within MIT1002_00168 at 183.870 kb on + strand, within MIT1002_00168 at 183.897 kb on - strand, within MIT1002_00168 at 183.970 kb on + strand, within MIT1002_00168 at 184.064 kb on - strand, within MIT1002_00168 at 184.079 kb on + strand, within MIT1002_00168 at 184.084 kb on + strand, within MIT1002_00168 at 184.087 kb on - strand, within MIT1002_00168 at 184.087 kb on - strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.089 kb on + strand, within MIT1002_00168 at 184.097 kb on - strand, within MIT1002_00168 at 184.097 kb on - strand, within MIT1002_00168 at 184.098 kb on - strand, within MIT1002_00168 at 184.169 kb on + strand, within MIT1002_00168 at 184.204 kb on - strand, within MIT1002_00168 at 184.204 kb on - strand, within MIT1002_00168 at 184.252 kb on - strand, within MIT1002_00168 at 184.291 kb on + strand, within MIT1002_00168 at 184.292 kb on + strand, within MIT1002_00168 at 184.298 kb on - strand, within MIT1002_00168 at 184.447 kb on + strand, within MIT1002_00168 at 184.506 kb on + strand, within MIT1002_00168 at 184.506 kb on + strand, within MIT1002_00168 at 184.540 kb on + strand, within MIT1002_00168 at 184.555 kb on - strand at 184.562 kb on - strand at 184.568 kb on + strand at 184.608 kb on - strand at 184.715 kb on - strand at 184.775 kb on + strand at 184.783 kb on - strand at 184.788 kb on + strand at 184.788 kb on + strand at 184.793 kb on - strand at 184.803 kb on + strand at 184.811 kb on + strand at 184.828 kb on + strand at 184.834 kb on - strand at 184.836 kb on - strand at 184.836 kb on - strand at 184.846 kb on - strand at 184.846 kb on - strand at 184.890 kb on - strand at 184.900 kb on + strand at 184.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 182,351 + MIT1002_00166 0.67 -1.2 182,359 + MIT1002_00166 0.68 +0.3 182,359 + MIT1002_00166 0.68 -1.8 182,405 - MIT1002_00166 0.73 +0.7 182,415 - MIT1002_00166 0.75 +0.1 182,469 - MIT1002_00166 0.81 +3.9 182,563 - +0.4 182,578 + -0.9 182,628 - -0.2 183,306 - -0.9 183,460 + +2.0 183,460 - +0.1 183,472 + MIT1002_00168 0.11 -0.3 183,478 - MIT1002_00168 0.11 +0.4 183,478 - MIT1002_00168 0.11 +0.4 183,515 + MIT1002_00168 0.14 +2.6 183,515 + MIT1002_00168 0.14 +0.7 183,515 + MIT1002_00168 0.14 -0.5 183,515 + MIT1002_00168 0.14 -0.5 183,523 - MIT1002_00168 0.14 +0.6 183,523 - MIT1002_00168 0.14 +0.5 183,523 - MIT1002_00168 0.14 -0.4 183,545 - MIT1002_00168 0.16 +1.3 183,631 + MIT1002_00168 0.22 +1.4 183,659 - MIT1002_00168 0.25 +0.7 183,800 + MIT1002_00168 0.35 +1.5 183,800 + MIT1002_00168 0.35 +0.2 183,800 + MIT1002_00168 0.35 +0.4 183,808 - MIT1002_00168 0.35 +0.5 183,840 + MIT1002_00168 0.38 -0.5 183,841 - MIT1002_00168 0.38 -0.6 183,854 + MIT1002_00168 0.39 +1.4 183,870 + MIT1002_00168 0.40 +0.2 183,897 - MIT1002_00168 0.42 +0.2 183,970 + MIT1002_00168 0.47 -0.9 184,064 - MIT1002_00168 0.54 +1.1 184,079 + MIT1002_00168 0.55 +1.9 184,084 + MIT1002_00168 0.56 +0.1 184,087 - MIT1002_00168 0.56 +0.1 184,087 - MIT1002_00168 0.56 -0.3 184,089 + MIT1002_00168 0.56 +0.0 184,089 + MIT1002_00168 0.56 -0.2 184,089 + MIT1002_00168 0.56 +0.7 184,089 + MIT1002_00168 0.56 -0.1 184,089 + MIT1002_00168 0.56 +0.1 184,089 + MIT1002_00168 0.56 +0.6 184,097 - MIT1002_00168 0.57 +0.9 184,097 - MIT1002_00168 0.57 +1.0 184,098 - MIT1002_00168 0.57 -1.0 184,169 + MIT1002_00168 0.62 -1.1 184,204 - MIT1002_00168 0.65 +1.9 184,204 - MIT1002_00168 0.65 +0.9 184,252 - MIT1002_00168 0.68 -1.0 184,291 + MIT1002_00168 0.71 +1.0 184,292 + MIT1002_00168 0.71 -0.9 184,298 - MIT1002_00168 0.72 +0.3 184,447 + MIT1002_00168 0.82 -1.3 184,506 + MIT1002_00168 0.87 +0.4 184,506 + MIT1002_00168 0.87 +1.2 184,540 + MIT1002_00168 0.89 -0.6 184,555 - -0.7 184,562 - +0.6 184,568 + +10.5 184,608 - +0.2 184,715 - +0.1 184,775 + -1.1 184,783 - +1.0 184,788 + -0.1 184,788 + -0.2 184,793 - +0.3 184,803 + +0.4 184,811 + -1.0 184,828 + -0.3 184,834 - +1.2 184,836 - +0.1 184,836 - +2.6 184,846 - -2.3 184,846 - -2.1 184,890 - +2.2 184,900 + -0.3 184,965 + -3.6
Or see this region's nucleotide sequence