Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00124

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00122 and MIT1002_00123 are separated by 256 nucleotidesMIT1002_00123 and MIT1002_00124 are separated by 235 nucleotidesMIT1002_00124 and MIT1002_00125 are separated by 137 nucleotidesMIT1002_00125 and MIT1002_00126 are separated by 224 nucleotides MIT1002_00122: MIT1002_00122 - UvsW helicase, at 131,341 to 133,731 _00122 MIT1002_00123: MIT1002_00123 - hypothetical protein, at 133,988 to 134,191 _00123 MIT1002_00124: MIT1002_00124 - Outer membrane protein W precursor, at 134,427 to 135,098 _00124 MIT1002_00125: MIT1002_00125 - hypothetical protein, at 135,236 to 135,703 _00125 MIT1002_00126: MIT1002_00126 - hypothetical protein, at 135,928 to 136,236 _00126 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.430 kb on + strand, within MIT1002_00122at 133.438 kb on - strand, within MIT1002_00122at 133.491 kb on - strand, within MIT1002_00122at 133.498 kb on - strandat 133.503 kb on - strandat 133.519 kb on + strandat 133.521 kb on - strandat 133.522 kb on + strandat 133.522 kb on + strandat 133.527 kb on - strandat 133.565 kb on + strandat 133.565 kb on + strandat 133.611 kb on + strandat 133.716 kb on - strandat 133.789 kb on - strandat 133.791 kb on + strandat 133.791 kb on + strandat 133.799 kb on - strandat 133.811 kb on + strandat 133.818 kb on - strandat 133.819 kb on - strandat 133.890 kb on - strandat 134.052 kb on - strand, within MIT1002_00123at 134.052 kb on - strand, within MIT1002_00123at 134.054 kb on + strand, within MIT1002_00123at 134.054 kb on + strand, within MIT1002_00123at 134.062 kb on + strand, within MIT1002_00123at 134.062 kb on - strand, within MIT1002_00123at 134.062 kb on - strand, within MIT1002_00123at 134.069 kb on + strand, within MIT1002_00123at 134.070 kb on - strand, within MIT1002_00123at 134.111 kb on - strand, within MIT1002_00123at 134.116 kb on - strand, within MIT1002_00123at 134.116 kb on - strand, within MIT1002_00123at 134.153 kb on - strand, within MIT1002_00123at 134.180 kb on + strandat 134.188 kb on - strandat 134.233 kb on - strandat 134.304 kb on + strandat 134.370 kb on + strandat 134.387 kb on - strandat 134.387 kb on - strandat 134.389 kb on + strandat 134.389 kb on + strandat 134.397 kb on - strandat 134.397 kb on - strandat 134.456 kb on + strandat 134.490 kb on + strandat 134.507 kb on + strand, within MIT1002_00124at 134.526 kb on + strand, within MIT1002_00124at 134.587 kb on + strand, within MIT1002_00124at 134.595 kb on - strand, within MIT1002_00124at 134.691 kb on + strand, within MIT1002_00124at 134.696 kb on + strand, within MIT1002_00124at 134.702 kb on + strand, within MIT1002_00124at 134.725 kb on - strand, within MIT1002_00124at 134.861 kb on + strand, within MIT1002_00124at 134.869 kb on - strand, within MIT1002_00124at 134.874 kb on - strand, within MIT1002_00124at 134.948 kb on - strand, within MIT1002_00124at 135.133 kb on + strandat 135.170 kb on + strandat 135.222 kb on + strandat 135.334 kb on + strand, within MIT1002_00125at 135.334 kb on - strand, within MIT1002_00125at 135.432 kb on + strand, within MIT1002_00125at 135.447 kb on - strand, within MIT1002_00125at 135.459 kb on - strand, within MIT1002_00125at 135.465 kb on + strand, within MIT1002_00125at 135.473 kb on - strand, within MIT1002_00125at 135.557 kb on - strand, within MIT1002_00125at 135.573 kb on + strand, within MIT1002_00125at 135.595 kb on - strand, within MIT1002_00125at 135.597 kb on + strand, within MIT1002_00125at 135.680 kb on + strandat 135.688 kb on - strandat 135.688 kb on - strandat 135.820 kb on + strandat 135.829 kb on - strandat 135.861 kb on - strandat 135.867 kb on - strandat 135.867 kb on - strandat 135.896 kb on + strandat 135.918 kb on + strandat 136.046 kb on + strand, within MIT1002_00126at 136.054 kb on - strand, within MIT1002_00126at 136.074 kb on - strand, within MIT1002_00126at 136.092 kb on + strand, within MIT1002_00126at 136.095 kb on - strand, within MIT1002_00126

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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133,430 + MIT1002_00122 0.87 -0.4
133,438 - MIT1002_00122 0.88 -1.4
133,491 - MIT1002_00122 0.90 -0.6
133,498 - -1.1
133,503 - -0.2
133,519 + +0.4
133,521 - -0.9
133,522 + +0.0
133,522 + -1.0
133,527 - +0.0
133,565 + -0.6
133,565 + -0.3
133,611 + +0.5
133,716 - +0.4
133,789 - -0.2
133,791 + -0.2
133,791 + +2.3
133,799 - +1.4
133,811 + +0.6
133,818 - -1.1
133,819 - +1.8
133,890 - +0.1
134,052 - MIT1002_00123 0.31 -2.4
134,052 - MIT1002_00123 0.31 +2.1
134,054 + MIT1002_00123 0.32 -0.7
134,054 + MIT1002_00123 0.32 +0.1
134,062 + MIT1002_00123 0.36 +0.2
134,062 - MIT1002_00123 0.36 +1.3
134,062 - MIT1002_00123 0.36 -1.7
134,069 + MIT1002_00123 0.40 +1.0
134,070 - MIT1002_00123 0.40 -0.0
134,111 - MIT1002_00123 0.60 +0.5
134,116 - MIT1002_00123 0.63 -1.1
134,116 - MIT1002_00123 0.63 +1.5
134,153 - MIT1002_00123 0.81 -0.8
134,180 + +0.5
134,188 - -1.7
134,233 - -0.4
134,304 + -0.6
134,370 + -1.0
134,387 - +1.2
134,387 - +1.5
134,389 + -0.7
134,389 + +1.0
134,397 - +0.3
134,397 - +1.4
134,456 + +0.4
134,490 + +0.2
134,507 + MIT1002_00124 0.12 -0.8
134,526 + MIT1002_00124 0.15 +1.0
134,587 + MIT1002_00124 0.24 +0.5
134,595 - MIT1002_00124 0.25 -0.2
134,691 + MIT1002_00124 0.39 -0.4
134,696 + MIT1002_00124 0.40 +0.3
134,702 + MIT1002_00124 0.41 +0.6
134,725 - MIT1002_00124 0.44 -0.7
134,861 + MIT1002_00124 0.65 -0.7
134,869 - MIT1002_00124 0.66 -2.0
134,874 - MIT1002_00124 0.67 -2.3
134,948 - MIT1002_00124 0.78 -2.2
135,133 + +1.9
135,170 + -0.5
135,222 + -0.5
135,334 + MIT1002_00125 0.21 -1.1
135,334 - MIT1002_00125 0.21 -0.2
135,432 + MIT1002_00125 0.42 +0.2
135,447 - MIT1002_00125 0.45 +0.2
135,459 - MIT1002_00125 0.48 +0.9
135,465 + MIT1002_00125 0.49 +0.5
135,473 - MIT1002_00125 0.51 -0.5
135,557 - MIT1002_00125 0.69 -1.1
135,573 + MIT1002_00125 0.72 -0.3
135,595 - MIT1002_00125 0.77 -0.0
135,597 + MIT1002_00125 0.77 -0.8
135,680 + +0.8
135,688 - -1.9
135,688 - -2.3
135,820 + -0.7
135,829 - -1.5
135,861 - -3.3
135,867 - -1.1
135,867 - +1.2
135,896 + -1.2
135,918 + +0.3
136,046 + MIT1002_00126 0.38 +1.4
136,054 - MIT1002_00126 0.41 -0.3
136,074 - MIT1002_00126 0.47 -1.5
136,092 + MIT1002_00126 0.53 -0.3
136,095 - MIT1002_00126 0.54 -1.0

Or see this region's nucleotide sequence