Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00019 and MIT1002_00020 are separated by 8 nucleotides MIT1002_00020 and MIT1002_00021 are separated by 216 nucleotides MIT1002_00021 and MIT1002_00022 are separated by 39 nucleotides
MIT1002_00019: MIT1002_00019 - Methionyl-tRNA formyltransferase, at 23,353 to 24,303
_00019
MIT1002_00020: MIT1002_00020 - Peptide deformylase 1, at 24,312 to 24,821
_00020
MIT1002_00021: MIT1002_00021 - LysM domain/BON superfamily protein, at 25,038 to 26,111
_00021
MIT1002_00022: MIT1002_00022 - DNA protecting protein DprA, at 26,151 to 27,260
_00022
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.375 kb on - strand, within MIT1002_00020 at 24.845 kb on - strand at 24.978 kb on - strand at 24.980 kb on + strand at 25.066 kb on + strand at 25.071 kb on + strand at 25.108 kb on + strand at 25.108 kb on + strand at 25.150 kb on - strand, within MIT1002_00021 at 25.150 kb on - strand, within MIT1002_00021 at 25.150 kb on - strand, within MIT1002_00021 at 25.152 kb on - strand, within MIT1002_00021 at 25.157 kb on + strand, within MIT1002_00021 at 25.167 kb on - strand, within MIT1002_00021 at 25.213 kb on + strand, within MIT1002_00021 at 25.257 kb on - strand, within MIT1002_00021 at 25.258 kb on + strand, within MIT1002_00021 at 25.262 kb on - strand, within MIT1002_00021 at 25.323 kb on - strand, within MIT1002_00021 at 25.343 kb on + strand, within MIT1002_00021 at 25.364 kb on - strand, within MIT1002_00021 at 25.394 kb on + strand, within MIT1002_00021 at 25.397 kb on - strand, within MIT1002_00021 at 25.402 kb on + strand, within MIT1002_00021 at 25.448 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.458 kb on - strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.530 kb on + strand, within MIT1002_00021 at 25.535 kb on + strand, within MIT1002_00021 at 25.548 kb on + strand, within MIT1002_00021 at 25.553 kb on + strand, within MIT1002_00021 at 25.561 kb on - strand, within MIT1002_00021 at 25.625 kb on + strand, within MIT1002_00021 at 25.633 kb on - strand, within MIT1002_00021 at 25.660 kb on - strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.746 kb on + strand, within MIT1002_00021 at 25.754 kb on - strand, within MIT1002_00021 at 25.772 kb on - strand, within MIT1002_00021 at 25.786 kb on + strand, within MIT1002_00021 at 25.856 kb on - strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.876 kb on + strand, within MIT1002_00021 at 25.881 kb on + strand, within MIT1002_00021 at 25.926 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.941 kb on + strand, within MIT1002_00021 at 25.980 kb on - strand, within MIT1002_00021 at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.107 kb on - strand at 26.112 kb on + strand at 26.113 kb on - strand at 26.137 kb on + strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.192 kb on - strand at 26.194 kb on + strand at 26.194 kb on + strand at 26.202 kb on - strand at 26.202 kb on - strand at 26.212 kb on - strand at 26.276 kb on - strand, within MIT1002_00022 at 26.308 kb on + strand, within MIT1002_00022 at 26.338 kb on - strand, within MIT1002_00022 at 26.363 kb on - strand, within MIT1002_00022 at 26.365 kb on + strand, within MIT1002_00022 at 26.433 kb on - strand, within MIT1002_00022 at 26.435 kb on + strand, within MIT1002_00022 at 26.450 kb on - strand, within MIT1002_00022 at 26.502 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.542 kb on - strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.589 kb on - strand, within MIT1002_00022 at 26.599 kb on + strand, within MIT1002_00022 at 26.607 kb on - strand, within MIT1002_00022 at 26.623 kb on + strand, within MIT1002_00022 at 26.628 kb on + strand, within MIT1002_00022 at 26.698 kb on - strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.717 kb on + strand, within MIT1002_00022 at 26.737 kb on + strand, within MIT1002_00022 at 26.742 kb on + strand, within MIT1002_00022 at 26.769 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.828 kb on - strand, within MIT1002_00022 at 26.837 kb on - strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.903 kb on - strand, within MIT1002_00022 at 26.924 kb on + strand, within MIT1002_00022 at 26.939 kb on + strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.962 kb on + strand, within MIT1002_00022
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 24,375 - MIT1002_00020 0.12 -1.6 24,845 - +0.6 24,978 - -0.6 24,980 + +0.0 25,066 + -2.6 25,071 + +1.1 25,108 + +0.2 25,108 + +1.0 25,150 - MIT1002_00021 0.10 -0.3 25,150 - MIT1002_00021 0.10 -1.1 25,150 - MIT1002_00021 0.10 +0.0 25,152 - MIT1002_00021 0.11 -1.1 25,157 + MIT1002_00021 0.11 -0.3 25,167 - MIT1002_00021 0.12 -1.2 25,213 + MIT1002_00021 0.16 -0.1 25,257 - MIT1002_00021 0.20 -0.4 25,258 + MIT1002_00021 0.20 -0.0 25,262 - MIT1002_00021 0.21 +0.1 25,323 - MIT1002_00021 0.27 +1.0 25,343 + MIT1002_00021 0.28 -1.1 25,364 - MIT1002_00021 0.30 -1.7 25,394 + MIT1002_00021 0.33 +0.7 25,397 - MIT1002_00021 0.33 +0.8 25,402 + MIT1002_00021 0.34 -1.1 25,448 + MIT1002_00021 0.38 -0.5 25,450 + MIT1002_00021 0.38 -0.3 25,450 + MIT1002_00021 0.38 +0.1 25,458 - MIT1002_00021 0.39 -0.0 25,499 + MIT1002_00021 0.43 -1.4 25,499 + MIT1002_00021 0.43 -1.2 25,530 + MIT1002_00021 0.46 +1.3 25,535 + MIT1002_00021 0.46 -0.4 25,548 + MIT1002_00021 0.47 -0.6 25,553 + MIT1002_00021 0.48 -1.8 25,561 - MIT1002_00021 0.49 -1.1 25,625 + MIT1002_00021 0.55 +0.0 25,633 - MIT1002_00021 0.55 -1.6 25,660 - MIT1002_00021 0.58 +2.7 25,735 + MIT1002_00021 0.65 -1.7 25,735 + MIT1002_00021 0.65 -0.1 25,743 - MIT1002_00021 0.66 +0.7 25,743 - MIT1002_00021 0.66 -1.2 25,746 + MIT1002_00021 0.66 +0.1 25,754 - MIT1002_00021 0.67 +0.5 25,772 - MIT1002_00021 0.68 +1.8 25,786 + MIT1002_00021 0.70 -1.0 25,856 - MIT1002_00021 0.76 -0.6 25,858 + MIT1002_00021 0.76 +0.1 25,858 + MIT1002_00021 0.76 -2.5 25,876 + MIT1002_00021 0.78 -0.8 25,881 + MIT1002_00021 0.78 +1.4 25,926 + MIT1002_00021 0.83 +0.1 25,936 + MIT1002_00021 0.84 +3.2 25,936 + MIT1002_00021 0.84 +0.2 25,936 + MIT1002_00021 0.84 +0.0 25,936 + MIT1002_00021 0.84 +0.6 25,941 + MIT1002_00021 0.84 -0.6 25,980 - MIT1002_00021 0.88 +1.3 26,105 + +0.8 26,105 + -0.4 26,105 + +0.6 26,105 + -0.2 26,105 + -0.6 26,105 + -1.5 26,107 - -0.1 26,112 + +1.1 26,113 - +0.2 26,137 + +1.3 26,177 - -2.0 26,177 - -2.6 26,177 - -0.2 26,192 - +0.7 26,194 + +0.5 26,194 + +0.3 26,202 - -0.1 26,202 - +0.7 26,212 - -1.4 26,276 - MIT1002_00022 0.11 -2.5 26,308 + MIT1002_00022 0.14 +0.0 26,338 - MIT1002_00022 0.17 +1.0 26,363 - MIT1002_00022 0.19 -1.3 26,365 + MIT1002_00022 0.19 -0.2 26,433 - MIT1002_00022 0.25 -0.3 26,435 + MIT1002_00022 0.26 -1.0 26,450 - MIT1002_00022 0.27 +1.1 26,502 + MIT1002_00022 0.32 -1.3 26,534 + MIT1002_00022 0.35 -0.5 26,534 + MIT1002_00022 0.35 +2.5 26,542 - MIT1002_00022 0.35 +1.6 26,559 + MIT1002_00022 0.37 -1.1 26,559 + MIT1002_00022 0.37 -1.8 26,559 + MIT1002_00022 0.37 +0.0 26,589 - MIT1002_00022 0.39 -0.6 26,599 + MIT1002_00022 0.40 +0.5 26,607 - MIT1002_00022 0.41 -0.2 26,623 + MIT1002_00022 0.43 -0.3 26,628 + MIT1002_00022 0.43 -0.6 26,698 - MIT1002_00022 0.49 +2.5 26,714 + MIT1002_00022 0.51 +0.4 26,714 + MIT1002_00022 0.51 +0.4 26,717 + MIT1002_00022 0.51 -0.0 26,737 + MIT1002_00022 0.53 +0.7 26,742 + MIT1002_00022 0.53 -2.5 26,769 + MIT1002_00022 0.56 +0.8 26,776 + MIT1002_00022 0.56 +1.0 26,776 + MIT1002_00022 0.56 -1.7 26,828 - MIT1002_00022 0.61 +1.2 26,837 - MIT1002_00022 0.62 +0.4 26,895 + MIT1002_00022 0.67 -0.2 26,895 + MIT1002_00022 0.67 +0.4 26,895 + MIT1002_00022 0.67 +0.2 26,903 - MIT1002_00022 0.68 -1.2 26,924 + MIT1002_00022 0.70 -0.3 26,939 + MIT1002_00022 0.71 -1.4 26,947 - MIT1002_00022 0.72 -0.1 26,947 - MIT1002_00022 0.72 -0.2 26,962 + MIT1002_00022 0.73 -2.4
Or see this region's nucleotide sequence