Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00015 and MIT1002_00016 are separated by 265 nucleotides MIT1002_00016 and MIT1002_00017 are separated by 115 nucleotides
MIT1002_00015: MIT1002_00015 - Sigma cross-reacting protein 27A, at 18,101 to 18,754
_00015
MIT1002_00016: MIT1002_00016 - Trk system potassium uptake protein TrkH, at 19,020 to 20,471
_00016
MIT1002_00017: MIT1002_00017 - Trk system potassium uptake protein TrkA, at 20,587 to 21,966
_00017
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.129 kb on + strand at 18.129 kb on + strand at 18.152 kb on + strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.219 kb on - strand, within MIT1002_00015 at 18.273 kb on - strand, within MIT1002_00015 at 18.309 kb on + strand, within MIT1002_00015 at 18.314 kb on + strand, within MIT1002_00015 at 18.322 kb on - strand, within MIT1002_00015 at 18.351 kb on - strand, within MIT1002_00015 at 18.403 kb on - strand, within MIT1002_00015 at 18.451 kb on + strand, within MIT1002_00015 at 18.471 kb on - strand, within MIT1002_00015 at 18.595 kb on - strand, within MIT1002_00015 at 18.606 kb on - strand, within MIT1002_00015 at 18.609 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.616 kb on + strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.626 kb on + strand, within MIT1002_00015 at 18.666 kb on - strand, within MIT1002_00015 at 18.682 kb on - strand, within MIT1002_00015 at 18.684 kb on - strand, within MIT1002_00015 at 18.701 kb on - strand at 18.706 kb on - strand at 18.706 kb on - strand at 18.727 kb on + strand at 18.727 kb on + strand at 18.822 kb on + strand at 18.822 kb on + strand at 18.836 kb on + strand at 18.856 kb on + strand at 18.880 kb on + strand at 20.565 kb on + strand at 20.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 18,129 + +1.5 18,129 + -0.1 18,152 + +0.7 18,160 - -0.3 18,160 - -2.4 18,160 - -0.7 18,160 - +0.1 18,219 - MIT1002_00015 0.18 -0.9 18,273 - MIT1002_00015 0.26 +1.4 18,309 + MIT1002_00015 0.32 -0.4 18,314 + MIT1002_00015 0.33 +0.9 18,322 - MIT1002_00015 0.34 -1.4 18,351 - MIT1002_00015 0.38 +2.3 18,403 - MIT1002_00015 0.46 +0.8 18,451 + MIT1002_00015 0.54 +1.3 18,471 - MIT1002_00015 0.57 -1.2 18,595 - MIT1002_00015 0.76 +2.4 18,606 - MIT1002_00015 0.77 +0.7 18,609 + MIT1002_00015 0.78 -0.5 18,611 + MIT1002_00015 0.78 +0.4 18,611 + MIT1002_00015 0.78 +2.7 18,616 + MIT1002_00015 0.79 -0.5 18,619 - MIT1002_00015 0.79 +0.1 18,619 - MIT1002_00015 0.79 -0.3 18,626 + MIT1002_00015 0.80 -0.0 18,666 - MIT1002_00015 0.86 -0.4 18,682 - MIT1002_00015 0.89 +2.2 18,684 - MIT1002_00015 0.89 +0.4 18,701 - -0.3 18,706 - +2.6 18,706 - +0.6 18,727 + -0.3 18,727 + +1.7 18,822 + +3.5 18,822 + -0.1 18,836 + +0.6 18,856 + -0.4 18,880 + +2.0 20,565 + +0.3 20,573 - -0.9
Or see this region's nucleotide sequence