Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19160

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19155 and LRK53_RS19160 are separated by 302 nucleotidesLRK53_RS19160 and LRK53_RS19165 are separated by 138 nucleotidesLRK53_RS19165 and LRK53_RS19170 are separated by 11 nucleotides LRK53_RS19155: LRK53_RS19155 - hypothetical protein, at 213,521 to 214,360 _RS19155 LRK53_RS19160: LRK53_RS19160 - recombination-associated protein RdgC, at 214,663 to 215,574 _RS19160 LRK53_RS19165: LRK53_RS19165 - hypothetical protein, at 215,713 to 215,898 _RS19165 LRK53_RS19170: LRK53_RS19170 - hypothetical protein, at 215,910 to 216,863 _RS19170 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.728 kb on + strand, within LRK53_RS19155at 213.728 kb on + strand, within LRK53_RS19155at 213.837 kb on - strand, within LRK53_RS19155at 213.874 kb on + strand, within LRK53_RS19155at 213.875 kb on - strand, within LRK53_RS19155at 214.069 kb on + strand, within LRK53_RS19155at 214.069 kb on + strand, within LRK53_RS19155at 214.070 kb on - strand, within LRK53_RS19155at 214.280 kb on + strandat 214.280 kb on + strandat 214.281 kb on - strandat 214.281 kb on - strandat 214.281 kb on - strandat 214.344 kb on - strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.432 kb on + strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.433 kb on - strandat 214.608 kb on + strandat 214.630 kb on - strandat 214.968 kb on + strand, within LRK53_RS19160at 214.969 kb on - strand, within LRK53_RS19160at 215.365 kb on + strand, within LRK53_RS19160at 215.366 kb on - strand, within LRK53_RS19160at 215.577 kb on + strandat 215.577 kb on + strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.752 kb on + strand, within LRK53_RS19165at 215.753 kb on - strand, within LRK53_RS19165at 215.753 kb on - strand, within LRK53_RS19165at 215.826 kb on - strand, within LRK53_RS19165at 215.826 kb on - strand, within LRK53_RS19165at 215.826 kb on - strand, within LRK53_RS19165at 215.909 kb on + strandat 215.909 kb on + strandat 215.909 kb on + strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 215.910 kb on - strandat 216.237 kb on - strand, within LRK53_RS19170at 216.237 kb on - strand, within LRK53_RS19170at 216.250 kb on + strand, within LRK53_RS19170at 216.251 kb on - strand, within LRK53_RS19170at 216.251 kb on - strand, within LRK53_RS19170at 216.316 kb on + strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.425 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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213,728 + LRK53_RS19155 0.25 +0.1
213,728 + LRK53_RS19155 0.25 -0.1
213,837 - LRK53_RS19155 0.38 -2.0
213,874 + LRK53_RS19155 0.42 +0.1
213,875 - LRK53_RS19155 0.42 +0.1
214,069 + LRK53_RS19155 0.65 +2.4
214,069 + LRK53_RS19155 0.65 -0.1
214,070 - LRK53_RS19155 0.65 +0.4
214,280 + -1.3
214,280 + -1.6
214,281 - +0.1
214,281 - -2.1
214,281 - -0.7
214,344 - -0.0
214,432 + +0.2
214,432 + -0.6
214,432 + +0.9
214,432 + -0.4
214,432 + -0.9
214,432 + -1.8
214,432 + +0.2
214,432 + +1.4
214,432 + -0.1
214,433 - -0.9
214,433 - -1.6
214,433 - -0.2
214,433 - -1.5
214,433 - -0.1
214,433 - +1.9
214,433 - -1.0
214,433 - -0.1
214,608 + +0.0
214,630 - -1.6
214,968 + LRK53_RS19160 0.33 -0.1
214,969 - LRK53_RS19160 0.34 +0.7
215,365 + LRK53_RS19160 0.77 -0.4
215,366 - LRK53_RS19160 0.77 +0.4
215,577 + -0.1
215,577 + +1.7
215,578 - -0.4
215,578 - -1.0
215,578 - -0.9
215,578 - +0.6
215,578 - +1.2
215,752 + LRK53_RS19165 0.21 -0.9
215,753 - LRK53_RS19165 0.22 +2.0
215,753 - LRK53_RS19165 0.22 -1.6
215,826 - LRK53_RS19165 0.61 +0.6
215,826 - LRK53_RS19165 0.61 -1.5
215,826 - LRK53_RS19165 0.61 +1.4
215,909 + -0.4
215,909 + +0.1
215,909 + -0.9
215,910 - -1.0
215,910 - +1.9
215,910 - -2.5
215,910 - -0.4
215,910 - -0.4
215,910 - -0.1
215,910 - -0.7
215,910 - +1.0
216,237 - LRK53_RS19170 0.34 -0.4
216,237 - LRK53_RS19170 0.34 -0.7
216,250 + LRK53_RS19170 0.36 +0.6
216,251 - LRK53_RS19170 0.36 -0.7
216,251 - LRK53_RS19170 0.36 +0.5
216,316 + LRK53_RS19170 0.43 +1.9
216,317 - LRK53_RS19170 0.43 -2.1
216,317 - LRK53_RS19170 0.43 +1.3
216,317 - LRK53_RS19170 0.43 -0.9
216,425 + LRK53_RS19170 0.54 -1.1
216,441 + LRK53_RS19170 0.56 +0.9
216,441 + LRK53_RS19170 0.56 -0.2
216,441 + LRK53_RS19170 0.56 -1.3
216,441 + LRK53_RS19170 0.56 -1.1
216,441 + LRK53_RS19170 0.56 -0.9
216,441 + LRK53_RS19170 0.56 +1.2
216,442 - LRK53_RS19170 0.56 -0.4
216,442 - LRK53_RS19170 0.56 +0.4
216,442 - LRK53_RS19170 0.56 -1.1
216,442 - LRK53_RS19170 0.56 -0.6
216,442 - LRK53_RS19170 0.56 +0.1
216,442 - LRK53_RS19170 0.56 +0.2
216,442 - LRK53_RS19170 0.56 -0.6
216,442 - LRK53_RS19170 0.56 +1.3
216,442 - LRK53_RS19170 0.56 -2.0
216,442 - LRK53_RS19170 0.56 -2.6
216,442 - LRK53_RS19170 0.56 +0.4
216,442 - LRK53_RS19170 0.56 -1.3
216,442 - LRK53_RS19170 0.56 +0.0
216,442 - LRK53_RS19170 0.56 -1.1

Or see this region's nucleotide sequence