Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18710 and LRK53_RS18715 are separated by 247 nucleotides LRK53_RS18715 and LRK53_RS18720 overlap by 14 nucleotides LRK53_RS18720 and LRK53_RS18725 overlap by 4 nucleotides
LRK53_RS18710: LRK53_RS18710 - DNA-binding protein, at 129,470 to 131,188
_RS18710
LRK53_RS18715: LRK53_RS18715 - hypothetical protein, at 131,436 to 132,440
_RS18715
LRK53_RS18720: LRK53_RS18720 - RES domain-containing protein, at 132,427 to 133,146
_RS18720
LRK53_RS18725: LRK53_RS18725 - tyrosine-type recombinase/integrase, at 133,143 to 134,270
_RS18725
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.515 kb on + strand, within LRK53_RS18710 at 130.516 kb on - strand, within LRK53_RS18710 at 130.516 kb on - strand, within LRK53_RS18710 at 130.516 kb on - strand, within LRK53_RS18710 at 130.516 kb on - strand, within LRK53_RS18710 at 130.575 kb on + strand, within LRK53_RS18710 at 130.575 kb on + strand, within LRK53_RS18710 at 130.575 kb on + strand, within LRK53_RS18710 at 130.575 kb on + strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.576 kb on - strand, within LRK53_RS18710 at 130.644 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.821 kb on + strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.822 kb on - strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.929 kb on + strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 130.930 kb on - strand, within LRK53_RS18710 at 131.244 kb on + strand at 131.244 kb on + strand at 131.244 kb on + strand at 131.244 kb on + strand at 131.244 kb on + strand at 131.244 kb on + strand at 131.245 kb on - strand at 131.245 kb on - strand at 131.286 kb on + strand at 131.346 kb on + strand at 131.367 kb on - strand at 132.490 kb on + strand at 132.490 kb on + strand at 132.491 kb on - strand at 132.491 kb on - strand at 132.491 kb on - strand at 132.491 kb on - strand at 132.608 kb on + strand, within LRK53_RS18720 at 132.608 kb on + strand, within LRK53_RS18720 at 132.609 kb on - strand, within LRK53_RS18720 at 132.609 kb on - strand, within LRK53_RS18720 at 132.619 kb on + strand, within LRK53_RS18720 at 132.619 kb on + strand, within LRK53_RS18720 at 132.620 kb on - strand, within LRK53_RS18720 at 132.620 kb on - strand, within LRK53_RS18720 at 132.620 kb on - strand, within LRK53_RS18720 at 132.679 kb on + strand, within LRK53_RS18720 at 132.697 kb on + strand, within LRK53_RS18720 at 132.697 kb on + strand, within LRK53_RS18720 at 132.697 kb on + strand, within LRK53_RS18720 at 132.697 kb on + strand, within LRK53_RS18720 at 132.697 kb on + strand, within LRK53_RS18720 at 132.698 kb on - strand, within LRK53_RS18720 at 132.698 kb on - strand, within LRK53_RS18720 at 132.725 kb on - strand, within LRK53_RS18720 at 132.725 kb on - strand, within LRK53_RS18720 at 132.725 kb on - strand, within LRK53_RS18720 at 132.964 kb on + strand, within LRK53_RS18720 at 132.964 kb on + strand, within LRK53_RS18720 at 132.965 kb on - strand, within LRK53_RS18720 at 132.965 kb on - strand, within LRK53_RS18720 at 132.965 kb on - strand, within LRK53_RS18720 at 132.973 kb on + strand, within LRK53_RS18720 at 132.973 kb on + strand, within LRK53_RS18720 at 132.973 kb on + strand, within LRK53_RS18720 at 132.974 kb on - strand, within LRK53_RS18720 at 133.142 kb on + strand at 133.142 kb on + strand at 133.142 kb on + strand at 133.143 kb on - strand at 133.143 kb on - strand at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.341 kb on + strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.342 kb on - strand, within LRK53_RS18725 at 133.415 kb on + strand, within LRK53_RS18725
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 130,515 + LRK53_RS18710 0.61 -0.7 130,516 - LRK53_RS18710 0.61 -1.2 130,516 - LRK53_RS18710 0.61 -0.8 130,516 - LRK53_RS18710 0.61 -1.2 130,516 - LRK53_RS18710 0.61 +0.3 130,575 + LRK53_RS18710 0.64 -1.0 130,575 + LRK53_RS18710 0.64 -1.2 130,575 + LRK53_RS18710 0.64 -2.5 130,575 + LRK53_RS18710 0.64 -2.9 130,576 - LRK53_RS18710 0.64 -1.0 130,576 - LRK53_RS18710 0.64 -0.8 130,576 - LRK53_RS18710 0.64 -0.4 130,576 - LRK53_RS18710 0.64 -2.2 130,576 - LRK53_RS18710 0.64 +0.8 130,576 - LRK53_RS18710 0.64 +0.0 130,576 - LRK53_RS18710 0.64 -0.6 130,576 - LRK53_RS18710 0.64 -1.4 130,576 - LRK53_RS18710 0.64 -1.0 130,644 + LRK53_RS18710 0.68 -0.6 130,821 + LRK53_RS18710 0.79 +0.2 130,821 + LRK53_RS18710 0.79 -0.1 130,821 + LRK53_RS18710 0.79 -2.8 130,821 + LRK53_RS18710 0.79 +0.0 130,821 + LRK53_RS18710 0.79 -2.4 130,821 + LRK53_RS18710 0.79 -2.8 130,821 + LRK53_RS18710 0.79 -1.4 130,821 + LRK53_RS18710 0.79 -1.4 130,821 + LRK53_RS18710 0.79 -1.7 130,821 + LRK53_RS18710 0.79 +0.2 130,821 + LRK53_RS18710 0.79 -1.0 130,821 + LRK53_RS18710 0.79 -2.2 130,821 + LRK53_RS18710 0.79 -2.1 130,822 - LRK53_RS18710 0.79 -1.0 130,822 - LRK53_RS18710 0.79 -0.5 130,822 - LRK53_RS18710 0.79 +1.3 130,822 - LRK53_RS18710 0.79 -0.8 130,822 - LRK53_RS18710 0.79 -0.3 130,822 - LRK53_RS18710 0.79 -1.5 130,822 - LRK53_RS18710 0.79 -3.0 130,822 - LRK53_RS18710 0.79 -0.2 130,822 - LRK53_RS18710 0.79 -0.5 130,822 - LRK53_RS18710 0.79 +0.3 130,822 - LRK53_RS18710 0.79 -2.6 130,822 - LRK53_RS18710 0.79 -0.2 130,822 - LRK53_RS18710 0.79 -0.4 130,822 - LRK53_RS18710 0.79 -2.0 130,822 - LRK53_RS18710 0.79 +1.0 130,822 - LRK53_RS18710 0.79 +2.6 130,929 + LRK53_RS18710 0.85 +0.0 130,929 + LRK53_RS18710 0.85 +0.8 130,929 + LRK53_RS18710 0.85 -0.3 130,929 + LRK53_RS18710 0.85 -1.3 130,929 + LRK53_RS18710 0.85 +0.5 130,929 + LRK53_RS18710 0.85 -1.1 130,929 + LRK53_RS18710 0.85 -0.3 130,929 + LRK53_RS18710 0.85 -0.6 130,929 + LRK53_RS18710 0.85 -1.0 130,929 + LRK53_RS18710 0.85 +1.4 130,929 + LRK53_RS18710 0.85 -1.0 130,929 + LRK53_RS18710 0.85 +1.8 130,929 + LRK53_RS18710 0.85 -0.7 130,929 + LRK53_RS18710 0.85 +0.6 130,929 + LRK53_RS18710 0.85 -0.6 130,930 - LRK53_RS18710 0.85 -1.0 130,930 - LRK53_RS18710 0.85 -0.0 130,930 - LRK53_RS18710 0.85 -0.8 130,930 - LRK53_RS18710 0.85 +0.3 130,930 - LRK53_RS18710 0.85 -1.7 130,930 - LRK53_RS18710 0.85 -0.7 130,930 - LRK53_RS18710 0.85 -3.1 130,930 - LRK53_RS18710 0.85 -0.3 130,930 - LRK53_RS18710 0.85 -0.1 130,930 - LRK53_RS18710 0.85 +0.4 130,930 - LRK53_RS18710 0.85 -0.2 131,244 + -1.2 131,244 + +0.8 131,244 + -2.0 131,244 + -1.1 131,244 + -1.2 131,244 + -2.0 131,245 - -2.5 131,245 - +0.7 131,286 + -1.7 131,346 + +0.8 131,367 - -0.4 132,490 + -0.4 132,490 + +2.4 132,491 - -0.9 132,491 - -1.9 132,491 - +0.6 132,491 - -1.7 132,608 + LRK53_RS18720 0.25 -1.7 132,608 + LRK53_RS18720 0.25 +1.2 132,609 - LRK53_RS18720 0.25 -1.2 132,609 - LRK53_RS18720 0.25 -0.2 132,619 + LRK53_RS18720 0.27 +2.4 132,619 + LRK53_RS18720 0.27 -1.2 132,620 - LRK53_RS18720 0.27 -0.8 132,620 - LRK53_RS18720 0.27 -1.1 132,620 - LRK53_RS18720 0.27 -1.6 132,679 + LRK53_RS18720 0.35 +1.0 132,697 + LRK53_RS18720 0.38 +0.2 132,697 + LRK53_RS18720 0.38 -0.6 132,697 + LRK53_RS18720 0.38 -1.1 132,697 + LRK53_RS18720 0.38 +0.4 132,697 + LRK53_RS18720 0.38 -0.7 132,698 - LRK53_RS18720 0.38 +1.4 132,698 - LRK53_RS18720 0.38 -2.0 132,725 - LRK53_RS18720 0.41 -1.3 132,725 - LRK53_RS18720 0.41 -1.7 132,725 - LRK53_RS18720 0.41 -3.0 132,964 + LRK53_RS18720 0.75 -1.2 132,964 + LRK53_RS18720 0.75 -0.2 132,965 - LRK53_RS18720 0.75 -1.6 132,965 - LRK53_RS18720 0.75 -2.3 132,965 - LRK53_RS18720 0.75 -0.0 132,973 + LRK53_RS18720 0.76 -0.0 132,973 + LRK53_RS18720 0.76 -2.8 132,973 + LRK53_RS18720 0.76 -1.4 132,974 - LRK53_RS18720 0.76 -0.7 133,142 + -1.0 133,142 + -0.9 133,142 + +0.0 133,143 - -0.2 133,143 - +0.8 133,341 + LRK53_RS18725 0.18 -2.2 133,341 + LRK53_RS18725 0.18 +0.2 133,341 + LRK53_RS18725 0.18 -1.1 133,341 + LRK53_RS18725 0.18 -1.4 133,341 + LRK53_RS18725 0.18 -1.0 133,341 + LRK53_RS18725 0.18 -1.4 133,341 + LRK53_RS18725 0.18 +0.4 133,341 + LRK53_RS18725 0.18 -1.5 133,341 + LRK53_RS18725 0.18 +1.9 133,341 + LRK53_RS18725 0.18 -1.5 133,341 + LRK53_RS18725 0.18 -1.6 133,341 + LRK53_RS18725 0.18 -1.0 133,341 + LRK53_RS18725 0.18 -0.3 133,341 + LRK53_RS18725 0.18 -1.0 133,341 + LRK53_RS18725 0.18 -1.6 133,341 + LRK53_RS18725 0.18 -0.9 133,341 + LRK53_RS18725 0.18 +0.9 133,341 + LRK53_RS18725 0.18 +0.4 133,341 + LRK53_RS18725 0.18 +1.0 133,341 + LRK53_RS18725 0.18 -1.2 133,341 + LRK53_RS18725 0.18 -1.1 133,342 - LRK53_RS18725 0.18 +0.0 133,342 - LRK53_RS18725 0.18 -1.4 133,342 - LRK53_RS18725 0.18 -1.5 133,342 - LRK53_RS18725 0.18 -1.7 133,342 - LRK53_RS18725 0.18 -0.7 133,342 - LRK53_RS18725 0.18 -0.8 133,342 - LRK53_RS18725 0.18 +0.4 133,342 - LRK53_RS18725 0.18 -1.7 133,342 - LRK53_RS18725 0.18 +0.8 133,342 - LRK53_RS18725 0.18 -1.1 133,342 - LRK53_RS18725 0.18 -0.1 133,415 + LRK53_RS18725 0.24 -2.3
Or see this region's nucleotide sequence