Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18650 and LRK53_RS18655 are separated by 11 nucleotides LRK53_RS18655 and LRK53_RS18660 are separated by 2 nucleotides LRK53_RS18660 and LRK53_RS18665 are separated by 268 nucleotides
LRK53_RS18650: LRK53_RS18650 - transposase, at 118,144 to 118,494
_RS18650
LRK53_RS18655: LRK53_RS18655 - type II toxin-antitoxin system MqsA family antitoxin, at 118,506 to 118,907
_RS18655
LRK53_RS18660: LRK53_RS18660 - type II toxin-antitoxin system MqsR family toxin, at 118,910 to 119,206
_RS18660
LRK53_RS18665: LRK53_RS18665 - hypothetical protein, at 119,475 to 120,146
_RS18665
Position (kb) 118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 117.617 kb on + strand at 117.617 kb on + strand at 117.617 kb on + strand at 117.618 kb on - strand at 117.618 kb on - strand at 117.618 kb on - strand at 117.618 kb on - strand at 117.653 kb on + strand at 117.654 kb on - strand at 117.654 kb on - strand at 117.719 kb on - strand at 117.751 kb on - strand at 117.855 kb on + strand at 117.855 kb on + strand at 117.856 kb on - strand at 117.883 kb on + strand at 117.884 kb on - strand at 117.910 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.932 kb on + strand at 117.933 kb on - strand at 117.933 kb on - strand at 117.933 kb on - strand at 117.935 kb on - strand at 117.935 kb on - strand at 117.978 kb on + strand at 117.978 kb on + strand at 118.020 kb on - strand at 118.020 kb on - strand at 118.079 kb on - strand at 118.130 kb on + strand at 118.131 kb on - strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.143 kb on + strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.144 kb on - strand at 118.181 kb on - strand, within LRK53_RS18650 at 118.181 kb on - strand, within LRK53_RS18650 at 118.323 kb on - strand, within LRK53_RS18650 at 118.453 kb on + strand, within LRK53_RS18650 at 118.471 kb on + strand at 118.472 kb on - strand at 118.965 kb on + strand, within LRK53_RS18660 at 118.965 kb on + strand, within LRK53_RS18660 at 118.965 kb on + strand, within LRK53_RS18660 at 118.966 kb on - strand, within LRK53_RS18660 at 118.966 kb on - strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.029 kb on + strand, within LRK53_RS18660 at 119.030 kb on - strand, within LRK53_RS18660 at 119.030 kb on - strand, within LRK53_RS18660 at 119.030 kb on - strand, within LRK53_RS18660 at 119.030 kb on - strand, within LRK53_RS18660 at 119.043 kb on + strand, within LRK53_RS18660 at 119.043 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.134 kb on + strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.135 kb on - strand, within LRK53_RS18660 at 119.222 kb on + strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.223 kb on - strand at 119.225 kb on + strand at 119.225 kb on + strand at 119.243 kb on + strand at 119.243 kb on + strand at 119.243 kb on + strand at 119.244 kb on - strand at 119.308 kb on + strand at 119.309 kb on - strand at 119.368 kb on + strand at 119.368 kb on + strand at 119.369 kb on - strand at 119.369 kb on - strand at 119.383 kb on - strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.426 kb on + strand at 119.427 kb on - strand at 119.470 kb on + strand at 119.470 kb on + strand at 119.470 kb on + strand at 119.470 kb on + strand at 119.471 kb on - strand at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.574 kb on + strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.575 kb on - strand, within LRK53_RS18665 at 119.642 kb on + strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665 at 119.643 kb on - strand, within LRK53_RS18665
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 117,617 + +0.2 117,617 + -0.6 117,617 + -0.3 117,618 - -0.1 117,618 - +0.3 117,618 - -0.4 117,618 - -0.8 117,653 + -0.9 117,654 - +1.4 117,654 - +0.8 117,719 - -2.1 117,751 - -0.6 117,855 + -0.4 117,855 + -0.2 117,856 - +1.0 117,883 + +1.0 117,884 - +0.3 117,910 + -1.9 117,932 + -0.9 117,932 + -1.7 117,932 + -3.1 117,932 + -1.8 117,932 + -0.4 117,932 + -0.9 117,932 + -0.7 117,932 + -0.1 117,932 + +0.4 117,933 - -1.5 117,933 - -1.1 117,933 - -1.5 117,935 - -0.9 117,935 - -0.6 117,978 + -0.0 117,978 + -0.9 118,020 - -0.8 118,020 - -0.5 118,079 - +0.4 118,130 + +0.8 118,131 - -0.8 118,143 + +0.2 118,143 + +1.2 118,143 + -0.6 118,143 + -1.7 118,143 + -2.2 118,143 + -0.9 118,143 + -2.9 118,143 + -1.1 118,143 + +0.0 118,143 + -0.2 118,143 + -0.6 118,143 + +0.1 118,143 + -0.1 118,143 + -0.4 118,143 + -1.1 118,143 + -1.3 118,143 + -1.4 118,144 - -2.1 118,144 - -0.2 118,144 - -1.3 118,144 - +0.4 118,144 - -1.0 118,144 - -0.2 118,144 - -0.6 118,144 - -1.2 118,144 - -1.3 118,144 - -2.2 118,144 - +0.8 118,144 - -0.4 118,144 - -0.6 118,144 - -2.2 118,181 - LRK53_RS18650 0.11 -0.6 118,181 - LRK53_RS18650 0.11 -0.4 118,323 - LRK53_RS18650 0.51 -1.5 118,453 + LRK53_RS18650 0.88 -2.6 118,471 + -0.2 118,472 - -1.3 118,965 + LRK53_RS18660 0.19 -2.4 118,965 + LRK53_RS18660 0.19 +3.7 118,965 + LRK53_RS18660 0.19 -1.1 118,966 - LRK53_RS18660 0.19 +1.1 118,966 - LRK53_RS18660 0.19 -0.2 119,029 + LRK53_RS18660 0.40 -2.2 119,029 + LRK53_RS18660 0.40 -1.4 119,029 + LRK53_RS18660 0.40 +0.1 119,029 + LRK53_RS18660 0.40 -1.5 119,029 + LRK53_RS18660 0.40 -0.3 119,029 + LRK53_RS18660 0.40 -0.4 119,029 + LRK53_RS18660 0.40 +1.6 119,029 + LRK53_RS18660 0.40 -0.5 119,029 + LRK53_RS18660 0.40 -0.8 119,030 - LRK53_RS18660 0.40 +0.1 119,030 - LRK53_RS18660 0.40 +1.2 119,030 - LRK53_RS18660 0.40 -0.2 119,030 - LRK53_RS18660 0.40 -1.5 119,043 + LRK53_RS18660 0.45 +0.4 119,043 + LRK53_RS18660 0.45 +1.4 119,134 + LRK53_RS18660 0.75 -0.0 119,134 + LRK53_RS18660 0.75 -1.5 119,134 + LRK53_RS18660 0.75 -1.7 119,134 + LRK53_RS18660 0.75 +0.1 119,134 + LRK53_RS18660 0.75 -0.4 119,134 + LRK53_RS18660 0.75 -0.6 119,134 + LRK53_RS18660 0.75 -2.2 119,134 + LRK53_RS18660 0.75 -1.2 119,134 + LRK53_RS18660 0.75 -1.2 119,134 + LRK53_RS18660 0.75 -1.1 119,134 + LRK53_RS18660 0.75 -2.1 119,134 + LRK53_RS18660 0.75 -3.1 119,135 - LRK53_RS18660 0.76 -0.8 119,135 - LRK53_RS18660 0.76 -0.8 119,135 - LRK53_RS18660 0.76 -0.2 119,135 - LRK53_RS18660 0.76 +0.1 119,135 - LRK53_RS18660 0.76 +1.4 119,135 - LRK53_RS18660 0.76 -1.2 119,135 - LRK53_RS18660 0.76 -3.3 119,135 - LRK53_RS18660 0.76 -0.2 119,135 - LRK53_RS18660 0.76 -0.2 119,135 - LRK53_RS18660 0.76 -1.3 119,222 + -0.9 119,223 - +0.1 119,223 - -1.0 119,223 - +1.0 119,223 - -1.5 119,223 - -0.8 119,225 + -1.4 119,225 + -1.0 119,243 + +0.6 119,243 + +1.1 119,243 + -0.9 119,244 - +0.9 119,308 + -1.8 119,309 - +0.8 119,368 + -0.3 119,368 + +0.2 119,369 - -2.8 119,369 - -1.5 119,383 - +0.1 119,426 + +1.2 119,426 + +2.1 119,426 + +0.4 119,426 + -1.1 119,426 + -1.6 119,427 - -0.5 119,470 + -1.4 119,470 + +0.1 119,470 + +2.4 119,470 + -0.2 119,471 - -1.1 119,574 + LRK53_RS18665 0.15 -0.6 119,574 + LRK53_RS18665 0.15 -1.2 119,574 + LRK53_RS18665 0.15 -0.4 119,574 + LRK53_RS18665 0.15 -1.8 119,574 + LRK53_RS18665 0.15 -0.6 119,574 + LRK53_RS18665 0.15 +0.1 119,574 + LRK53_RS18665 0.15 -2.9 119,574 + LRK53_RS18665 0.15 -1.2 119,574 + LRK53_RS18665 0.15 -2.0 119,574 + LRK53_RS18665 0.15 +0.7 119,574 + LRK53_RS18665 0.15 -1.8 119,575 - LRK53_RS18665 0.15 -0.6 119,575 - LRK53_RS18665 0.15 -0.1 119,575 - LRK53_RS18665 0.15 -1.2 119,575 - LRK53_RS18665 0.15 -0.4 119,575 - LRK53_RS18665 0.15 -1.9 119,575 - LRK53_RS18665 0.15 +0.3 119,575 - LRK53_RS18665 0.15 -2.1 119,575 - LRK53_RS18665 0.15 -1.3 119,575 - LRK53_RS18665 0.15 +0.1 119,575 - LRK53_RS18665 0.15 -2.2 119,575 - LRK53_RS18665 0.15 -0.6 119,575 - LRK53_RS18665 0.15 -1.2 119,642 + LRK53_RS18665 0.25 -1.4 119,643 - LRK53_RS18665 0.25 -0.6 119,643 - LRK53_RS18665 0.25 -0.3 119,643 - LRK53_RS18665 0.25 -0.4 119,643 - LRK53_RS18665 0.25 -2.0 119,643 - LRK53_RS18665 0.25 -0.9
Or see this region's nucleotide sequence