Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18375

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18370 and LRK53_RS18375 are separated by 12 nucleotidesLRK53_RS18375 and LRK53_RS18380 are separated by 284 nucleotides LRK53_RS18370: LRK53_RS18370 - DUF3150 domain-containing protein, at 48,066 to 49,085 _RS18370 LRK53_RS18375: LRK53_RS18375 - hypothetical protein, at 49,098 to 50,978 _RS18375 LRK53_RS18380: LRK53_RS18380 - toprim domain-containing protein, at 51,263 to 52,525 _RS18380 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.413 kb on + strand, within LRK53_RS18370at 48.413 kb on + strand, within LRK53_RS18370at 48.414 kb on - strand, within LRK53_RS18370at 48.414 kb on - strand, within LRK53_RS18370at 48.441 kb on + strand, within LRK53_RS18370at 48.441 kb on + strand, within LRK53_RS18370at 48.442 kb on - strand, within LRK53_RS18370at 48.442 kb on - strand, within LRK53_RS18370at 48.772 kb on + strand, within LRK53_RS18370at 48.849 kb on + strand, within LRK53_RS18370at 48.849 kb on + strand, within LRK53_RS18370at 48.927 kb on + strand, within LRK53_RS18370at 48.927 kb on + strand, within LRK53_RS18370at 48.928 kb on - strand, within LRK53_RS18370at 49.083 kb on + strandat 49.084 kb on - strandat 49.135 kb on + strandat 49.135 kb on + strandat 49.135 kb on + strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.136 kb on - strandat 49.265 kb on + strandat 49.266 kb on - strandat 49.266 kb on - strandat 49.296 kb on + strand, within LRK53_RS18375at 49.296 kb on + strand, within LRK53_RS18375at 49.296 kb on + strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.297 kb on - strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.352 kb on + strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.353 kb on - strand, within LRK53_RS18375at 49.369 kb on - strand, within LRK53_RS18375at 49.418 kb on - strand, within LRK53_RS18375at 49.512 kb on + strand, within LRK53_RS18375at 49.512 kb on + strand, within LRK53_RS18375at 49.513 kb on - strand, within LRK53_RS18375at 49.530 kb on + strand, within LRK53_RS18375at 49.531 kb on - strand, within LRK53_RS18375at 49.648 kb on - strand, within LRK53_RS18375at 49.761 kb on + strand, within LRK53_RS18375at 50.280 kb on + strand, within LRK53_RS18375at 50.281 kb on - strand, within LRK53_RS18375at 50.332 kb on + strand, within LRK53_RS18375at 50.479 kb on + strand, within LRK53_RS18375at 50.479 kb on + strand, within LRK53_RS18375at 50.530 kb on + strand, within LRK53_RS18375at 50.962 kb on + strandat 50.963 kb on - strandat 50.963 kb on - strandat 50.963 kb on - strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.991 kb on - strandat 50.991 kb on - strandat 50.991 kb on - strandat 50.991 kb on - strandat 51.017 kb on + strandat 51.018 kb on - strandat 51.018 kb on - strandat 51.018 kb on - strandat 51.262 kb on + strandat 51.296 kb on + strandat 51.296 kb on + strandat 51.297 kb on - strandat 51.297 kb on - strandat 51.413 kb on - strand, within LRK53_RS18380at 51.413 kb on - strand, within LRK53_RS18380at 51.430 kb on + strand, within LRK53_RS18380at 51.431 kb on - strand, within LRK53_RS18380at 51.893 kb on + strand, within LRK53_RS18380at 51.894 kb on - strand, within LRK53_RS18380at 51.902 kb on + strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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48,413 + LRK53_RS18370 0.34 -0.9
48,413 + LRK53_RS18370 0.34 -0.4
48,414 - LRK53_RS18370 0.34 -0.9
48,414 - LRK53_RS18370 0.34 -2.1
48,441 + LRK53_RS18370 0.37 -0.6
48,441 + LRK53_RS18370 0.37 -0.1
48,442 - LRK53_RS18370 0.37 -0.1
48,442 - LRK53_RS18370 0.37 +1.4
48,772 + LRK53_RS18370 0.69 -0.6
48,849 + LRK53_RS18370 0.77 -2.9
48,849 + LRK53_RS18370 0.77 -0.1
48,927 + LRK53_RS18370 0.84 -1.1
48,927 + LRK53_RS18370 0.84 -1.1
48,928 - LRK53_RS18370 0.85 -3.2
49,083 + -1.0
49,084 - -1.7
49,135 + -1.1
49,135 + -1.9
49,135 + -1.1
49,136 - -1.4
49,136 - +0.2
49,136 - -0.0
49,136 - +0.3
49,136 - +0.4
49,265 + +0.0
49,266 - -0.1
49,266 - -0.2
49,296 + LRK53_RS18375 0.11 -0.6
49,296 + LRK53_RS18375 0.11 -0.5
49,296 + LRK53_RS18375 0.11 -0.1
49,297 - LRK53_RS18375 0.11 -0.4
49,297 - LRK53_RS18375 0.11 +1.4
49,297 - LRK53_RS18375 0.11 -1.0
49,297 - LRK53_RS18375 0.11 -1.4
49,297 - LRK53_RS18375 0.11 -1.4
49,297 - LRK53_RS18375 0.11 -0.1
49,297 - LRK53_RS18375 0.11 -2.5
49,297 - LRK53_RS18375 0.11 -1.6
49,297 - LRK53_RS18375 0.11 -1.9
49,297 - LRK53_RS18375 0.11 -0.9
49,297 - LRK53_RS18375 0.11 -1.0
49,352 + LRK53_RS18375 0.14 -0.6
49,352 + LRK53_RS18375 0.14 +0.7
49,352 + LRK53_RS18375 0.14 -1.7
49,353 - LRK53_RS18375 0.14 -1.3
49,353 - LRK53_RS18375 0.14 -0.4
49,353 - LRK53_RS18375 0.14 +0.7
49,353 - LRK53_RS18375 0.14 -1.4
49,369 - LRK53_RS18375 0.14 -2.3
49,418 - LRK53_RS18375 0.17 +1.0
49,512 + LRK53_RS18375 0.22 -1.3
49,512 + LRK53_RS18375 0.22 -0.1
49,513 - LRK53_RS18375 0.22 -0.6
49,530 + LRK53_RS18375 0.23 -0.4
49,531 - LRK53_RS18375 0.23 +1.4
49,648 - LRK53_RS18375 0.29 -0.4
49,761 + LRK53_RS18375 0.35 -1.1
50,280 + LRK53_RS18375 0.63 -2.9
50,281 - LRK53_RS18375 0.63 -0.6
50,332 + LRK53_RS18375 0.66 -0.5
50,479 + LRK53_RS18375 0.73 -0.1
50,479 + LRK53_RS18375 0.73 -0.6
50,530 + LRK53_RS18375 0.76 -1.1
50,962 + -0.7
50,963 - -0.1
50,963 - -1.0
50,963 - -0.6
50,990 + -0.6
50,990 + -0.9
50,990 + -0.8
50,990 + -1.4
50,990 + -0.9
50,990 + -1.6
50,991 - -2.5
50,991 - +0.2
50,991 - -0.9
50,991 - -1.1
51,017 + -0.4
51,018 - -1.5
51,018 - -0.6
51,018 - -0.4
51,262 + +0.1
51,296 + -1.8
51,296 + -0.9
51,297 - -0.9
51,297 - +0.4
51,413 - LRK53_RS18380 0.12 -0.5
51,413 - LRK53_RS18380 0.12 -1.3
51,430 + LRK53_RS18380 0.13 -1.6
51,431 - LRK53_RS18380 0.13 -0.1
51,893 + LRK53_RS18380 0.50 +1.4
51,894 - LRK53_RS18380 0.50 -0.6
51,902 + LRK53_RS18380 0.51 +0.0
51,903 - LRK53_RS18380 0.51 -1.0
51,903 - LRK53_RS18380 0.51 -0.6
51,903 - LRK53_RS18380 0.51 -0.9

Or see this region's nucleotide sequence