Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17355 and LRK53_RS17360 are separated by 39 nucleotides LRK53_RS17360 and LRK53_RS17365 are separated by 46 nucleotides LRK53_RS17365 and LRK53_RS17370 overlap by 4 nucleotides
LRK53_RS17355: LRK53_RS17355 - tRNA-Thr, at 3,812,453 to 3,812,528
_RS17355
LRK53_RS17360: LRK53_RS17360 - SPOR domain-containing protein, at 3,812,568 to 3,813,257
_RS17360
LRK53_RS17365: LRK53_RS17365 - type III pantothenate kinase, at 3,813,304 to 3,814,047
_RS17365
LRK53_RS17370: LRK53_RS17370 - biotin--[acetyl-CoA-carboxylase] ligase, at 3,814,044 to 3,815,033
_RS17370
Position (kb)
3813
3814
3815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3812.325 kb on + strand at 3812.325 kb on + strand at 3812.326 kb on - strand at 3812.326 kb on - strand at 3812.326 kb on - strand at 3812.326 kb on - strand at 3812.326 kb on - strand at 3812.326 kb on - strand at 3812.544 kb on + strand at 3812.544 kb on + strand at 3812.544 kb on + strand at 3812.544 kb on + strand at 3812.545 kb on - strand at 3812.545 kb on - strand at 3812.545 kb on - strand at 3812.545 kb on - strand at 3812.545 kb on - strand at 3812.665 kb on + strand, within LRK53_RS17360 at 3812.665 kb on + strand, within LRK53_RS17360 at 3812.665 kb on + strand, within LRK53_RS17360 at 3812.673 kb on + strand, within LRK53_RS17360 at 3812.674 kb on - strand, within LRK53_RS17360 at 3812.812 kb on + strand, within LRK53_RS17360 at 3812.812 kb on + strand, within LRK53_RS17360 at 3812.813 kb on - strand, within LRK53_RS17360 at 3812.813 kb on - strand, within LRK53_RS17360 at 3812.813 kb on - strand, within LRK53_RS17360 at 3812.813 kb on - strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.887 kb on + strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3812.888 kb on - strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.019 kb on + strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.020 kb on - strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.178 kb on + strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.179 kb on - strand, within LRK53_RS17360 at 3813.216 kb on - strand at 3813.216 kb on - strand at 3813.292 kb on - strand at 3813.292 kb on - strand at 3813.292 kb on - strand at 3814.057 kb on - strand at 3814.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 3,812,325 + -0.3 3,812,325 + -2.1 3,812,326 - -0.4 3,812,326 - -0.0 3,812,326 - -2.3 3,812,326 - -0.7 3,812,326 - +0.6 3,812,326 - -1.1 3,812,544 + -0.7 3,812,544 + +1.3 3,812,544 + -2.0 3,812,544 + +0.9 3,812,545 - -0.0 3,812,545 - -0.2 3,812,545 - -2.4 3,812,545 - +1.3 3,812,545 - -0.5 3,812,665 + LRK53_RS17360 0.14 -1.9 3,812,665 + LRK53_RS17360 0.14 +0.0 3,812,665 + LRK53_RS17360 0.14 +0.6 3,812,673 + LRK53_RS17360 0.15 +0.9 3,812,674 - LRK53_RS17360 0.15 -1.8 3,812,812 + LRK53_RS17360 0.35 -1.9 3,812,812 + LRK53_RS17360 0.35 -0.0 3,812,813 - LRK53_RS17360 0.36 +1.3 3,812,813 - LRK53_RS17360 0.36 -0.6 3,812,813 - LRK53_RS17360 0.36 +0.7 3,812,813 - LRK53_RS17360 0.36 -0.8 3,812,887 + LRK53_RS17360 0.46 +0.3 3,812,887 + LRK53_RS17360 0.46 -1.3 3,812,887 + LRK53_RS17360 0.46 -0.7 3,812,887 + LRK53_RS17360 0.46 +0.1 3,812,887 + LRK53_RS17360 0.46 +0.3 3,812,887 + LRK53_RS17360 0.46 -1.7 3,812,888 - LRK53_RS17360 0.46 +1.6 3,812,888 - LRK53_RS17360 0.46 +0.8 3,812,888 - LRK53_RS17360 0.46 -1.4 3,812,888 - LRK53_RS17360 0.46 -1.3 3,812,888 - LRK53_RS17360 0.46 -2.1 3,812,888 - LRK53_RS17360 0.46 -0.8 3,812,888 - LRK53_RS17360 0.46 -1.9 3,812,888 - LRK53_RS17360 0.46 +1.3 3,812,888 - LRK53_RS17360 0.46 +0.2 3,812,888 - LRK53_RS17360 0.46 +0.1 3,813,019 + LRK53_RS17360 0.65 -0.4 3,813,019 + LRK53_RS17360 0.65 -3.1 3,813,019 + LRK53_RS17360 0.65 -0.8 3,813,019 + LRK53_RS17360 0.65 -0.7 3,813,019 + LRK53_RS17360 0.65 -0.9 3,813,019 + LRK53_RS17360 0.65 +0.1 3,813,019 + LRK53_RS17360 0.65 -0.5 3,813,020 - LRK53_RS17360 0.66 -1.8 3,813,020 - LRK53_RS17360 0.66 -0.4 3,813,020 - LRK53_RS17360 0.66 +2.3 3,813,020 - LRK53_RS17360 0.66 +0.0 3,813,020 - LRK53_RS17360 0.66 +0.4 3,813,020 - LRK53_RS17360 0.66 -0.9 3,813,020 - LRK53_RS17360 0.66 -1.5 3,813,020 - LRK53_RS17360 0.66 +2.7 3,813,020 - LRK53_RS17360 0.66 +1.8 3,813,020 - LRK53_RS17360 0.66 -0.2 3,813,178 + LRK53_RS17360 0.88 +0.1 3,813,178 + LRK53_RS17360 0.88 -0.6 3,813,178 + LRK53_RS17360 0.88 -0.9 3,813,178 + LRK53_RS17360 0.88 -1.6 3,813,178 + LRK53_RS17360 0.88 -1.7 3,813,178 + LRK53_RS17360 0.88 +0.7 3,813,178 + LRK53_RS17360 0.88 +0.1 3,813,178 + LRK53_RS17360 0.88 -0.8 3,813,179 - LRK53_RS17360 0.89 +0.4 3,813,179 - LRK53_RS17360 0.89 -1.1 3,813,179 - LRK53_RS17360 0.89 -0.0 3,813,179 - LRK53_RS17360 0.89 +1.1 3,813,179 - LRK53_RS17360 0.89 -1.0 3,813,179 - LRK53_RS17360 0.89 -1.1 3,813,179 - LRK53_RS17360 0.89 +0.3 3,813,179 - LRK53_RS17360 0.89 -1.1 3,813,179 - LRK53_RS17360 0.89 -1.4 3,813,179 - LRK53_RS17360 0.89 -0.4 3,813,179 - LRK53_RS17360 0.89 +0.8 3,813,179 - LRK53_RS17360 0.89 -2.7 3,813,216 - -0.3 3,813,216 - -0.9 3,813,292 - +0.7 3,813,292 - -0.2 3,813,292 - -1.3 3,814,057 - -0.9 3,814,057 - -0.2
Or see this region's nucleotide sequence