Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17365

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17355 and LRK53_RS17360 are separated by 39 nucleotidesLRK53_RS17360 and LRK53_RS17365 are separated by 46 nucleotidesLRK53_RS17365 and LRK53_RS17370 overlap by 4 nucleotides LRK53_RS17355: LRK53_RS17355 - tRNA-Thr, at 3,812,453 to 3,812,528 _RS17355 LRK53_RS17360: LRK53_RS17360 - SPOR domain-containing protein, at 3,812,568 to 3,813,257 _RS17360 LRK53_RS17365: LRK53_RS17365 - type III pantothenate kinase, at 3,813,304 to 3,814,047 _RS17365 LRK53_RS17370: LRK53_RS17370 - biotin--[acetyl-CoA-carboxylase] ligase, at 3,814,044 to 3,815,033 _RS17370 Position (kb) 3813 3814 3815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3812.325 kb on + strandat 3812.325 kb on + strandat 3812.326 kb on - strandat 3812.326 kb on - strandat 3812.326 kb on - strandat 3812.326 kb on - strandat 3812.326 kb on - strandat 3812.326 kb on - strandat 3812.544 kb on + strandat 3812.544 kb on + strandat 3812.544 kb on + strandat 3812.544 kb on + strandat 3812.545 kb on - strandat 3812.545 kb on - strandat 3812.545 kb on - strandat 3812.545 kb on - strandat 3812.545 kb on - strandat 3812.665 kb on + strand, within LRK53_RS17360at 3812.665 kb on + strand, within LRK53_RS17360at 3812.665 kb on + strand, within LRK53_RS17360at 3812.673 kb on + strand, within LRK53_RS17360at 3812.674 kb on - strand, within LRK53_RS17360at 3812.812 kb on + strand, within LRK53_RS17360at 3812.812 kb on + strand, within LRK53_RS17360at 3812.813 kb on - strand, within LRK53_RS17360at 3812.813 kb on - strand, within LRK53_RS17360at 3812.813 kb on - strand, within LRK53_RS17360at 3812.813 kb on - strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.887 kb on + strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3812.888 kb on - strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.019 kb on + strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.020 kb on - strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.178 kb on + strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.179 kb on - strand, within LRK53_RS17360at 3813.216 kb on - strandat 3813.216 kb on - strandat 3813.292 kb on - strandat 3813.292 kb on - strandat 3813.292 kb on - strandat 3814.057 kb on - strandat 3814.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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3,812,325 + -0.3
3,812,325 + -2.1
3,812,326 - -0.4
3,812,326 - -0.0
3,812,326 - -2.3
3,812,326 - -0.7
3,812,326 - +0.6
3,812,326 - -1.1
3,812,544 + -0.7
3,812,544 + +1.3
3,812,544 + -2.0
3,812,544 + +0.9
3,812,545 - -0.0
3,812,545 - -0.2
3,812,545 - -2.4
3,812,545 - +1.3
3,812,545 - -0.5
3,812,665 + LRK53_RS17360 0.14 -1.9
3,812,665 + LRK53_RS17360 0.14 +0.0
3,812,665 + LRK53_RS17360 0.14 +0.6
3,812,673 + LRK53_RS17360 0.15 +0.9
3,812,674 - LRK53_RS17360 0.15 -1.8
3,812,812 + LRK53_RS17360 0.35 -1.9
3,812,812 + LRK53_RS17360 0.35 -0.0
3,812,813 - LRK53_RS17360 0.36 +1.3
3,812,813 - LRK53_RS17360 0.36 -0.6
3,812,813 - LRK53_RS17360 0.36 +0.7
3,812,813 - LRK53_RS17360 0.36 -0.8
3,812,887 + LRK53_RS17360 0.46 +0.3
3,812,887 + LRK53_RS17360 0.46 -1.3
3,812,887 + LRK53_RS17360 0.46 -0.7
3,812,887 + LRK53_RS17360 0.46 +0.1
3,812,887 + LRK53_RS17360 0.46 +0.3
3,812,887 + LRK53_RS17360 0.46 -1.7
3,812,888 - LRK53_RS17360 0.46 +1.6
3,812,888 - LRK53_RS17360 0.46 +0.8
3,812,888 - LRK53_RS17360 0.46 -1.4
3,812,888 - LRK53_RS17360 0.46 -1.3
3,812,888 - LRK53_RS17360 0.46 -2.1
3,812,888 - LRK53_RS17360 0.46 -0.8
3,812,888 - LRK53_RS17360 0.46 -1.9
3,812,888 - LRK53_RS17360 0.46 +1.3
3,812,888 - LRK53_RS17360 0.46 +0.2
3,812,888 - LRK53_RS17360 0.46 +0.1
3,813,019 + LRK53_RS17360 0.65 -0.4
3,813,019 + LRK53_RS17360 0.65 -3.1
3,813,019 + LRK53_RS17360 0.65 -0.8
3,813,019 + LRK53_RS17360 0.65 -0.7
3,813,019 + LRK53_RS17360 0.65 -0.9
3,813,019 + LRK53_RS17360 0.65 +0.1
3,813,019 + LRK53_RS17360 0.65 -0.5
3,813,020 - LRK53_RS17360 0.66 -1.8
3,813,020 - LRK53_RS17360 0.66 -0.4
3,813,020 - LRK53_RS17360 0.66 +2.3
3,813,020 - LRK53_RS17360 0.66 +0.0
3,813,020 - LRK53_RS17360 0.66 +0.4
3,813,020 - LRK53_RS17360 0.66 -0.9
3,813,020 - LRK53_RS17360 0.66 -1.5
3,813,020 - LRK53_RS17360 0.66 +2.7
3,813,020 - LRK53_RS17360 0.66 +1.8
3,813,020 - LRK53_RS17360 0.66 -0.2
3,813,178 + LRK53_RS17360 0.88 +0.1
3,813,178 + LRK53_RS17360 0.88 -0.6
3,813,178 + LRK53_RS17360 0.88 -0.9
3,813,178 + LRK53_RS17360 0.88 -1.6
3,813,178 + LRK53_RS17360 0.88 -1.7
3,813,178 + LRK53_RS17360 0.88 +0.7
3,813,178 + LRK53_RS17360 0.88 +0.1
3,813,178 + LRK53_RS17360 0.88 -0.8
3,813,179 - LRK53_RS17360 0.89 +0.4
3,813,179 - LRK53_RS17360 0.89 -1.1
3,813,179 - LRK53_RS17360 0.89 -0.0
3,813,179 - LRK53_RS17360 0.89 +1.1
3,813,179 - LRK53_RS17360 0.89 -1.0
3,813,179 - LRK53_RS17360 0.89 -1.1
3,813,179 - LRK53_RS17360 0.89 +0.3
3,813,179 - LRK53_RS17360 0.89 -1.1
3,813,179 - LRK53_RS17360 0.89 -1.4
3,813,179 - LRK53_RS17360 0.89 -0.4
3,813,179 - LRK53_RS17360 0.89 +0.8
3,813,179 - LRK53_RS17360 0.89 -2.7
3,813,216 - -0.3
3,813,216 - -0.9
3,813,292 - +0.7
3,813,292 - -0.2
3,813,292 - -1.3
3,814,057 - -0.9
3,814,057 - -0.2

Or see this region's nucleotide sequence