Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15935

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15930 and LRK53_RS15935 are separated by 239 nucleotidesLRK53_RS15935 and LRK53_RS15940 are separated by 201 nucleotides LRK53_RS15930: LRK53_RS15930 - class I SAM-dependent methyltransferase, at 3,491,780 to 3,492,355 _RS15930 LRK53_RS15935: LRK53_RS15935 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 3,492,595 to 3,493,968 _RS15935 LRK53_RS15940: LRK53_RS15940 - endonuclease domain-containing protein, at 3,494,170 to 3,495,513 _RS15940 Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3491.655 kb on + strandat 3491.751 kb on + strandat 3491.751 kb on + strandat 3491.752 kb on - strandat 3491.752 kb on - strandat 3491.752 kb on - strandat 3491.752 kb on - strandat 3491.752 kb on - strandat 3491.752 kb on - strandat 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.957 kb on + strand, within LRK53_RS15930at 3491.958 kb on - strand, within LRK53_RS15930at 3491.958 kb on - strand, within LRK53_RS15930at 3492.225 kb on + strand, within LRK53_RS15930at 3492.225 kb on + strand, within LRK53_RS15930at 3492.226 kb on - strand, within LRK53_RS15930at 3492.245 kb on + strand, within LRK53_RS15930at 3492.245 kb on + strand, within LRK53_RS15930at 3492.245 kb on + strand, within LRK53_RS15930at 3492.245 kb on + strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.246 kb on - strand, within LRK53_RS15930at 3492.368 kb on + strandat 3492.368 kb on + strandat 3492.368 kb on + strandat 3492.368 kb on + strandat 3492.369 kb on - strandat 3492.369 kb on - strandat 3492.544 kb on + strandat 3492.544 kb on + strandat 3492.544 kb on + strandat 3492.544 kb on + strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3492.545 kb on - strandat 3494.150 kb on + strandat 3494.151 kb on - strandat 3494.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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3,491,655 + -2.0
3,491,751 + +0.8
3,491,751 + -2.1
3,491,752 - +0.5
3,491,752 - +0.0
3,491,752 - -0.0
3,491,752 - -0.8
3,491,752 - +1.2
3,491,752 - -1.5
3,491,957 + LRK53_RS15930 0.31 +1.5
3,491,957 + LRK53_RS15930 0.31 -1.6
3,491,957 + LRK53_RS15930 0.31 -0.4
3,491,957 + LRK53_RS15930 0.31 +1.7
3,491,957 + LRK53_RS15930 0.31 +0.8
3,491,957 + LRK53_RS15930 0.31 -1.5
3,491,957 + LRK53_RS15930 0.31 -1.2
3,491,958 - LRK53_RS15930 0.31 +0.3
3,491,958 - LRK53_RS15930 0.31 +0.0
3,492,225 + LRK53_RS15930 0.77 -2.2
3,492,225 + LRK53_RS15930 0.77 -0.3
3,492,226 - LRK53_RS15930 0.77 -1.4
3,492,245 + LRK53_RS15930 0.81 -0.5
3,492,245 + LRK53_RS15930 0.81 -1.6
3,492,245 + LRK53_RS15930 0.81 -0.5
3,492,245 + LRK53_RS15930 0.81 -1.8
3,492,246 - LRK53_RS15930 0.81 -1.4
3,492,246 - LRK53_RS15930 0.81 -0.7
3,492,246 - LRK53_RS15930 0.81 +0.5
3,492,246 - LRK53_RS15930 0.81 -2.0
3,492,246 - LRK53_RS15930 0.81 -0.8
3,492,246 - LRK53_RS15930 0.81 -0.7
3,492,246 - LRK53_RS15930 0.81 +0.5
3,492,368 + +1.2
3,492,368 + +1.8
3,492,368 + +0.3
3,492,368 + +1.0
3,492,369 - -1.8
3,492,369 - +0.8
3,492,544 + +2.3
3,492,544 + +2.5
3,492,544 + -1.3
3,492,544 + -0.3
3,492,545 - -0.3
3,492,545 - +0.2
3,492,545 - -1.5
3,492,545 - -0.1
3,492,545 - -1.8
3,492,545 - -0.2
3,492,545 - -0.2
3,492,545 - -0.4
3,492,545 - -0.1
3,492,545 - -1.0
3,492,545 - -0.2
3,492,545 - -0.6
3,492,545 - -2.8
3,494,150 + -2.3
3,494,151 - -0.2
3,494,151 - -2.3

Or see this region's nucleotide sequence