Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15930 and LRK53_RS15935 are separated by 239 nucleotides LRK53_RS15935 and LRK53_RS15940 are separated by 201 nucleotides
LRK53_RS15930: LRK53_RS15930 - class I SAM-dependent methyltransferase, at 3,491,780 to 3,492,355
_RS15930
LRK53_RS15935: LRK53_RS15935 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 3,492,595 to 3,493,968
_RS15935
LRK53_RS15940: LRK53_RS15940 - endonuclease domain-containing protein, at 3,494,170 to 3,495,513
_RS15940
Position (kb)
3492
3493
3494 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3491.655 kb on + strand at 3491.751 kb on + strand at 3491.751 kb on + strand at 3491.752 kb on - strand at 3491.752 kb on - strand at 3491.752 kb on - strand at 3491.752 kb on - strand at 3491.752 kb on - strand at 3491.752 kb on - strand at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.957 kb on + strand, within LRK53_RS15930 at 3491.958 kb on - strand, within LRK53_RS15930 at 3491.958 kb on - strand, within LRK53_RS15930 at 3492.225 kb on + strand, within LRK53_RS15930 at 3492.225 kb on + strand, within LRK53_RS15930 at 3492.226 kb on - strand, within LRK53_RS15930 at 3492.245 kb on + strand, within LRK53_RS15930 at 3492.245 kb on + strand, within LRK53_RS15930 at 3492.245 kb on + strand, within LRK53_RS15930 at 3492.245 kb on + strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.246 kb on - strand, within LRK53_RS15930 at 3492.368 kb on + strand at 3492.368 kb on + strand at 3492.368 kb on + strand at 3492.368 kb on + strand at 3492.369 kb on - strand at 3492.369 kb on - strand at 3492.544 kb on + strand at 3492.544 kb on + strand at 3492.544 kb on + strand at 3492.544 kb on + strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3492.545 kb on - strand at 3494.150 kb on + strand at 3494.151 kb on - strand at 3494.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 3,491,655 + -2.0 3,491,751 + +0.8 3,491,751 + -2.1 3,491,752 - +0.5 3,491,752 - +0.0 3,491,752 - -0.0 3,491,752 - -0.8 3,491,752 - +1.2 3,491,752 - -1.5 3,491,957 + LRK53_RS15930 0.31 +1.5 3,491,957 + LRK53_RS15930 0.31 -1.6 3,491,957 + LRK53_RS15930 0.31 -0.4 3,491,957 + LRK53_RS15930 0.31 +1.7 3,491,957 + LRK53_RS15930 0.31 +0.8 3,491,957 + LRK53_RS15930 0.31 -1.5 3,491,957 + LRK53_RS15930 0.31 -1.2 3,491,958 - LRK53_RS15930 0.31 +0.3 3,491,958 - LRK53_RS15930 0.31 +0.0 3,492,225 + LRK53_RS15930 0.77 -2.2 3,492,225 + LRK53_RS15930 0.77 -0.3 3,492,226 - LRK53_RS15930 0.77 -1.4 3,492,245 + LRK53_RS15930 0.81 -0.5 3,492,245 + LRK53_RS15930 0.81 -1.6 3,492,245 + LRK53_RS15930 0.81 -0.5 3,492,245 + LRK53_RS15930 0.81 -1.8 3,492,246 - LRK53_RS15930 0.81 -1.4 3,492,246 - LRK53_RS15930 0.81 -0.7 3,492,246 - LRK53_RS15930 0.81 +0.5 3,492,246 - LRK53_RS15930 0.81 -2.0 3,492,246 - LRK53_RS15930 0.81 -0.8 3,492,246 - LRK53_RS15930 0.81 -0.7 3,492,246 - LRK53_RS15930 0.81 +0.5 3,492,368 + +1.2 3,492,368 + +1.8 3,492,368 + +0.3 3,492,368 + +1.0 3,492,369 - -1.8 3,492,369 - +0.8 3,492,544 + +2.3 3,492,544 + +2.5 3,492,544 + -1.3 3,492,544 + -0.3 3,492,545 - -0.3 3,492,545 - +0.2 3,492,545 - -1.5 3,492,545 - -0.1 3,492,545 - -1.8 3,492,545 - -0.2 3,492,545 - -0.2 3,492,545 - -0.4 3,492,545 - -0.1 3,492,545 - -1.0 3,492,545 - -0.2 3,492,545 - -0.6 3,492,545 - -2.8 3,494,150 + -2.3 3,494,151 - -0.2 3,494,151 - -2.3
Or see this region's nucleotide sequence