Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15195

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15185 and LRK53_RS15190 overlap by 4 nucleotidesLRK53_RS15190 and LRK53_RS15195 are separated by 103 nucleotidesLRK53_RS15195 and LRK53_RS15200 overlap by 4 nucleotidesLRK53_RS15200 and LRK53_RS15205 are separated by 107 nucleotides LRK53_RS15185: LRK53_RS15185 - methyl-accepting chemotaxis protein, at 3,314,594 to 3,315,898 _RS15185 LRK53_RS15190: LRK53_RS15190 - flagellar basal body P-ring formation protein FlgA, at 3,315,895 to 3,316,623 _RS15190 LRK53_RS15195: LRK53_RS15195 - flagellar biosynthesis anti-sigma factor FlgM, at 3,316,727 to 3,317,050 _RS15195 LRK53_RS15200: LRK53_RS15200 - flagellar protein FlgN, at 3,317,047 to 3,317,493 _RS15200 LRK53_RS15205: LRK53_RS15205 - HDOD domain-containing protein, at 3,317,601 to 3,318,884 _RS15205 Position (kb) 3316 3317 3318Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3316.013 kb on + strand, within LRK53_RS15190at 3316.013 kb on + strand, within LRK53_RS15190at 3316.014 kb on - strand, within LRK53_RS15190at 3316.014 kb on - strand, within LRK53_RS15190at 3316.048 kb on + strand, within LRK53_RS15190at 3316.048 kb on + strand, within LRK53_RS15190at 3316.049 kb on - strand, within LRK53_RS15190at 3316.150 kb on + strand, within LRK53_RS15190at 3316.151 kb on - strand, within LRK53_RS15190at 3316.151 kb on - strand, within LRK53_RS15190at 3316.151 kb on - strand, within LRK53_RS15190at 3316.151 kb on - strand, within LRK53_RS15190at 3316.345 kb on + strand, within LRK53_RS15190at 3316.345 kb on + strand, within LRK53_RS15190at 3316.346 kb on - strand, within LRK53_RS15190at 3316.346 kb on - strand, within LRK53_RS15190at 3316.346 kb on - strand, within LRK53_RS15190at 3316.346 kb on - strand, within LRK53_RS15190at 3316.346 kb on - strand, within LRK53_RS15190at 3316.496 kb on + strand, within LRK53_RS15190at 3316.496 kb on + strand, within LRK53_RS15190at 3316.696 kb on + strandat 3316.697 kb on - strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.733 kb on - strandat 3316.733 kb on - strandat 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3317.326 kb on + strand, within LRK53_RS15200at 3317.327 kb on - strand, within LRK53_RS15200at 3317.434 kb on + strand, within LRK53_RS15200at 3317.489 kb on + strandat 3317.489 kb on + strandat 3317.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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3,316,013 + LRK53_RS15190 0.16 -0.7
3,316,013 + LRK53_RS15190 0.16 +2.0
3,316,014 - LRK53_RS15190 0.16 +0.9
3,316,014 - LRK53_RS15190 0.16 +0.7
3,316,048 + LRK53_RS15190 0.21 -0.8
3,316,048 + LRK53_RS15190 0.21 +0.5
3,316,049 - LRK53_RS15190 0.21 -1.7
3,316,150 + LRK53_RS15190 0.35 -1.2
3,316,151 - LRK53_RS15190 0.35 -1.9
3,316,151 - LRK53_RS15190 0.35 -0.4
3,316,151 - LRK53_RS15190 0.35 -0.5
3,316,151 - LRK53_RS15190 0.35 -0.3
3,316,345 + LRK53_RS15190 0.62 -0.6
3,316,345 + LRK53_RS15190 0.62 -1.0
3,316,346 - LRK53_RS15190 0.62 +0.5
3,316,346 - LRK53_RS15190 0.62 -3.8
3,316,346 - LRK53_RS15190 0.62 -0.5
3,316,346 - LRK53_RS15190 0.62 -0.5
3,316,346 - LRK53_RS15190 0.62 -1.7
3,316,496 + LRK53_RS15190 0.82 -0.4
3,316,496 + LRK53_RS15190 0.82 -0.3
3,316,696 + +1.1
3,316,697 - +0.1
3,316,732 + -0.4
3,316,732 + +0.5
3,316,732 + -2.4
3,316,732 + -0.6
3,316,732 + +0.1
3,316,732 + -1.0
3,316,732 + -0.3
3,316,732 + -2.4
3,316,733 - -2.8
3,316,733 - -1.0
3,316,973 + LRK53_RS15195 0.76 +1.3
3,316,973 + LRK53_RS15195 0.76 -1.8
3,316,973 + LRK53_RS15195 0.76 -0.8
3,316,973 + LRK53_RS15195 0.76 -0.3
3,316,973 + LRK53_RS15195 0.76 -1.4
3,316,973 + LRK53_RS15195 0.76 -1.0
3,316,973 + LRK53_RS15195 0.76 -1.2
3,316,973 + LRK53_RS15195 0.76 -1.7
3,316,973 + LRK53_RS15195 0.76 +1.1
3,316,974 - LRK53_RS15195 0.76 -0.5
3,316,974 - LRK53_RS15195 0.76 -3.7
3,316,974 - LRK53_RS15195 0.76 -2.5
3,316,974 - LRK53_RS15195 0.76 -0.3
3,316,974 - LRK53_RS15195 0.76 -0.7
3,316,974 - LRK53_RS15195 0.76 +0.5
3,316,974 - LRK53_RS15195 0.76 -0.3
3,317,326 + LRK53_RS15200 0.62 +0.0
3,317,327 - LRK53_RS15200 0.63 -2.2
3,317,434 + LRK53_RS15200 0.87 +0.9
3,317,489 + -0.4
3,317,489 + -0.6
3,317,490 - -1.0

Or see this region's nucleotide sequence