Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14855 and LRK53_RS14860 are separated by 27 nucleotides LRK53_RS14860 and LRK53_RS14865 are separated by 202 nucleotides LRK53_RS14865 and LRK53_RS14870 are separated by 6 nucleotides
LRK53_RS14855: LRK53_RS14855 - PhoH family protein, at 3,251,894 to 3,252,916
_RS14855
LRK53_RS14860: LRK53_RS14860 - rRNA maturation RNase YbeY, at 3,252,944 to 3,253,441
_RS14860
LRK53_RS14865: LRK53_RS14865 - CBS domain-containing protein, at 3,253,644 to 3,254,483
_RS14865
LRK53_RS14870: LRK53_RS14870 - DUF4105 domain-containing protein, at 3,254,490 to 3,255,695
_RS14870
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3252.718 kb on + strand, within LRK53_RS14855 at 3252.839 kb on + strand at 3252.839 kb on + strand at 3252.840 kb on - strand at 3253.434 kb on - strand at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.007 kb on + strand, within LRK53_RS14865 at 3254.145 kb on + strand, within LRK53_RS14865 at 3254.145 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.340 kb on + strand, within LRK53_RS14865 at 3254.418 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand at 3254.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 3,252,718 + LRK53_RS14855 0.81 +0.7 3,252,839 + -0.4 3,252,839 + -1.6 3,252,840 - -1.1 3,253,434 - -0.5 3,254,007 + LRK53_RS14865 0.43 -0.6 3,254,007 + LRK53_RS14865 0.43 -1.3 3,254,007 + LRK53_RS14865 0.43 -0.6 3,254,007 + LRK53_RS14865 0.43 -0.6 3,254,145 + LRK53_RS14865 0.60 -2.9 3,254,145 + LRK53_RS14865 0.60 -1.4 3,254,340 + LRK53_RS14865 0.83 +0.4 3,254,340 + LRK53_RS14865 0.83 -0.0 3,254,340 + LRK53_RS14865 0.83 -0.6 3,254,340 + LRK53_RS14865 0.83 -0.3 3,254,340 + LRK53_RS14865 0.83 +0.4 3,254,418 + +0.4 3,254,481 + -0.7 3,254,481 + -0.3 3,254,481 + -1.2 3,254,481 + -0.4 3,254,481 + +0.2 3,254,481 + -0.6 3,254,481 + -1.7
Or see this region's nucleotide sequence