Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13405

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13400 and LRK53_RS13405 are separated by 177 nucleotidesLRK53_RS13405 and LRK53_RS13410 are separated by 20 nucleotidesLRK53_RS13410 and LRK53_RS13415 are separated by 110 nucleotides LRK53_RS13400: LRK53_RS13400 - GTPase ObgE, at 2,960,790 to 2,961,869 _RS13400 LRK53_RS13405: LRK53_RS13405 - 50S ribosomal protein L27, at 2,962,047 to 2,962,304 _RS13405 LRK53_RS13410: LRK53_RS13410 - 50S ribosomal protein L21, at 2,962,325 to 2,962,639 _RS13410 LRK53_RS13415: LRK53_RS13415 - DUF2059 domain-containing protein, at 2,962,750 to 2,963,379 _RS13415 Position (kb) 2962 2963Strain fitness (log2 ratio) -2 -1 0 1at 2961.898 kb on - strandat 2961.898 kb on - strandat 2961.898 kb on - strandat 2961.934 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2961.960 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.049 kb on - strandat 2962.710 kb on - strandat 2962.710 kb on - strandat 2963.075 kb on + strand, within LRK53_RS13415at 2963.075 kb on + strand, within LRK53_RS13415at 2963.076 kb on - strand, within LRK53_RS13415at 2963.187 kb on - strand, within LRK53_RS13415

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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2,961,898 - -1.9
2,961,898 - -0.2
2,961,898 - -0.4
2,961,934 - -0.1
2,961,960 - -1.7
2,961,960 - -1.2
2,961,960 - -0.4
2,961,960 - -1.0
2,961,960 - +1.7
2,961,960 - -1.9
2,961,960 - +0.4
2,962,049 - -0.8
2,962,049 - -0.1
2,962,049 - -0.4
2,962,049 - -0.2
2,962,049 - -0.9
2,962,049 - -0.8
2,962,049 - -1.9
2,962,049 - +0.1
2,962,049 - -1.3
2,962,049 - -1.8
2,962,049 - -1.0
2,962,049 - -0.4
2,962,049 - -1.2
2,962,049 - -1.6
2,962,049 - -0.0
2,962,049 - -2.3
2,962,049 - -1.5
2,962,049 - -0.8
2,962,049 - -1.5
2,962,049 - -0.5
2,962,049 - +0.2
2,962,049 - +1.0
2,962,049 - +0.1
2,962,049 - -0.1
2,962,710 - -1.0
2,962,710 - -1.0
2,963,075 + LRK53_RS13415 0.52 +1.5
2,963,075 + LRK53_RS13415 0.52 -1.7
2,963,076 - LRK53_RS13415 0.52 -1.3
2,963,187 - LRK53_RS13415 0.69 -0.1

Or see this region's nucleotide sequence