Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11550 and LRK53_RS11555 are separated by 76 nucleotides LRK53_RS11555 and LRK53_RS11560 overlap by 1 nucleotides
LRK53_RS11550: LRK53_RS11550 - DUF4785 family protein, at 2,568,737 to 2,569,990
_RS11550
LRK53_RS11555: LRK53_RS11555 - EF-P lysine aminoacylase EpmA, at 2,570,067 to 2,571,023
_RS11555
LRK53_RS11560: LRK53_RS11560 - NAD-dependent DNA ligase LigA, at 2,571,023 to 2,573,434
_RS11560
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2569.168 kb on + strand, within LRK53_RS11550 at 2569.169 kb on - strand, within LRK53_RS11550 at 2569.169 kb on - strand, within LRK53_RS11550 at 2569.310 kb on + strand, within LRK53_RS11550 at 2569.311 kb on - strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.325 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.575 kb on + strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.576 kb on - strand, within LRK53_RS11550 at 2569.627 kb on + strand, within LRK53_RS11550 at 2569.773 kb on - strand, within LRK53_RS11550 at 2569.773 kb on - strand, within LRK53_RS11550 at 2569.866 kb on - strand at 2569.866 kb on - strand at 2569.866 kb on - strand at 2569.902 kb on - strand at 2569.965 kb on + strand at 2569.966 kb on - strand at 2569.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,569,168 + LRK53_RS11550 0.34 -1.3 2,569,169 - LRK53_RS11550 0.34 -3.2 2,569,169 - LRK53_RS11550 0.34 -0.4 2,569,310 + LRK53_RS11550 0.46 -1.5 2,569,311 - LRK53_RS11550 0.46 -0.4 2,569,325 + LRK53_RS11550 0.47 -2.8 2,569,325 + LRK53_RS11550 0.47 +1.5 2,569,325 + LRK53_RS11550 0.47 -1.4 2,569,325 + LRK53_RS11550 0.47 -0.3 2,569,325 + LRK53_RS11550 0.47 -0.7 2,569,325 + LRK53_RS11550 0.47 -0.1 2,569,325 + LRK53_RS11550 0.47 -0.6 2,569,325 + LRK53_RS11550 0.47 -1.1 2,569,575 + LRK53_RS11550 0.67 -0.6 2,569,575 + LRK53_RS11550 0.67 -1.9 2,569,575 + LRK53_RS11550 0.67 -1.0 2,569,575 + LRK53_RS11550 0.67 +0.7 2,569,575 + LRK53_RS11550 0.67 -1.8 2,569,575 + LRK53_RS11550 0.67 -1.1 2,569,575 + LRK53_RS11550 0.67 +0.1 2,569,575 + LRK53_RS11550 0.67 -0.1 2,569,575 + LRK53_RS11550 0.67 -0.3 2,569,575 + LRK53_RS11550 0.67 +0.1 2,569,575 + LRK53_RS11550 0.67 -0.1 2,569,575 + LRK53_RS11550 0.67 -1.6 2,569,575 + LRK53_RS11550 0.67 -1.9 2,569,575 + LRK53_RS11550 0.67 -1.5 2,569,575 + LRK53_RS11550 0.67 +0.5 2,569,575 + LRK53_RS11550 0.67 -0.9 2,569,576 - LRK53_RS11550 0.67 -0.4 2,569,576 - LRK53_RS11550 0.67 -0.6 2,569,576 - LRK53_RS11550 0.67 -1.8 2,569,576 - LRK53_RS11550 0.67 +1.0 2,569,576 - LRK53_RS11550 0.67 +0.1 2,569,576 - LRK53_RS11550 0.67 -2.7 2,569,576 - LRK53_RS11550 0.67 -1.4 2,569,576 - LRK53_RS11550 0.67 -0.5 2,569,627 + LRK53_RS11550 0.71 -0.6 2,569,773 - LRK53_RS11550 0.83 -0.1 2,569,773 - LRK53_RS11550 0.83 -0.4 2,569,866 - +0.3 2,569,866 - -1.2 2,569,866 - -2.1 2,569,902 - -2.4 2,569,965 + -1.2 2,569,966 - -1.6 2,569,988 + -0.5
Or see this region's nucleotide sequence