Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11555

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11550 and LRK53_RS11555 are separated by 76 nucleotidesLRK53_RS11555 and LRK53_RS11560 overlap by 1 nucleotides LRK53_RS11550: LRK53_RS11550 - DUF4785 family protein, at 2,568,737 to 2,569,990 _RS11550 LRK53_RS11555: LRK53_RS11555 - EF-P lysine aminoacylase EpmA, at 2,570,067 to 2,571,023 _RS11555 LRK53_RS11560: LRK53_RS11560 - NAD-dependent DNA ligase LigA, at 2,571,023 to 2,573,434 _RS11560 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -3 -2 -1 0 1at 2569.168 kb on + strand, within LRK53_RS11550at 2569.169 kb on - strand, within LRK53_RS11550at 2569.169 kb on - strand, within LRK53_RS11550at 2569.310 kb on + strand, within LRK53_RS11550at 2569.311 kb on - strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.627 kb on + strand, within LRK53_RS11550at 2569.773 kb on - strand, within LRK53_RS11550at 2569.773 kb on - strand, within LRK53_RS11550at 2569.866 kb on - strandat 2569.866 kb on - strandat 2569.866 kb on - strandat 2569.902 kb on - strandat 2569.965 kb on + strandat 2569.966 kb on - strandat 2569.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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2,569,168 + LRK53_RS11550 0.34 -1.3
2,569,169 - LRK53_RS11550 0.34 -3.2
2,569,169 - LRK53_RS11550 0.34 -0.4
2,569,310 + LRK53_RS11550 0.46 -1.5
2,569,311 - LRK53_RS11550 0.46 -0.4
2,569,325 + LRK53_RS11550 0.47 -2.8
2,569,325 + LRK53_RS11550 0.47 +1.5
2,569,325 + LRK53_RS11550 0.47 -1.4
2,569,325 + LRK53_RS11550 0.47 -0.3
2,569,325 + LRK53_RS11550 0.47 -0.7
2,569,325 + LRK53_RS11550 0.47 -0.1
2,569,325 + LRK53_RS11550 0.47 -0.6
2,569,325 + LRK53_RS11550 0.47 -1.1
2,569,575 + LRK53_RS11550 0.67 -0.6
2,569,575 + LRK53_RS11550 0.67 -1.9
2,569,575 + LRK53_RS11550 0.67 -1.0
2,569,575 + LRK53_RS11550 0.67 +0.7
2,569,575 + LRK53_RS11550 0.67 -1.8
2,569,575 + LRK53_RS11550 0.67 -1.1
2,569,575 + LRK53_RS11550 0.67 +0.1
2,569,575 + LRK53_RS11550 0.67 -0.1
2,569,575 + LRK53_RS11550 0.67 -0.3
2,569,575 + LRK53_RS11550 0.67 +0.1
2,569,575 + LRK53_RS11550 0.67 -0.1
2,569,575 + LRK53_RS11550 0.67 -1.6
2,569,575 + LRK53_RS11550 0.67 -1.9
2,569,575 + LRK53_RS11550 0.67 -1.5
2,569,575 + LRK53_RS11550 0.67 +0.5
2,569,575 + LRK53_RS11550 0.67 -0.9
2,569,576 - LRK53_RS11550 0.67 -0.4
2,569,576 - LRK53_RS11550 0.67 -0.6
2,569,576 - LRK53_RS11550 0.67 -1.8
2,569,576 - LRK53_RS11550 0.67 +1.0
2,569,576 - LRK53_RS11550 0.67 +0.1
2,569,576 - LRK53_RS11550 0.67 -2.7
2,569,576 - LRK53_RS11550 0.67 -1.4
2,569,576 - LRK53_RS11550 0.67 -0.5
2,569,627 + LRK53_RS11550 0.71 -0.6
2,569,773 - LRK53_RS11550 0.83 -0.1
2,569,773 - LRK53_RS11550 0.83 -0.4
2,569,866 - +0.3
2,569,866 - -1.2
2,569,866 - -2.1
2,569,902 - -2.4
2,569,965 + -1.2
2,569,966 - -1.6
2,569,988 + -0.5

Or see this region's nucleotide sequence