Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10795 and LRK53_RS10800 are separated by 11 nucleotides LRK53_RS10800 and LRK53_RS10805 are separated by 69 nucleotides LRK53_RS10805 and LRK53_RS10810 are separated by 90 nucleotides LRK53_RS10810 and LRK53_RS10815 are separated by 38 nucleotides
LRK53_RS10795: LRK53_RS10795 - HigA family addiction module antitoxin, at 2,410,424 to 2,411,539
_RS10795
LRK53_RS10800: LRK53_RS10800 - hypothetical protein, at 2,411,551 to 2,412,030
_RS10800
LRK53_RS10805: LRK53_RS10805 - hypothetical protein, at 2,412,100 to 2,412,393
_RS10805
LRK53_RS10810: LRK53_RS10810 - cation transporter, at 2,412,484 to 2,413,101
_RS10810
LRK53_RS10815: LRK53_RS10815 - hypothetical protein, at 2,413,140 to 2,414,312
_RS10815
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2413.570 kb on + strand, within LRK53_RS10815 at 2413.641 kb on + strand, within LRK53_RS10815 at 2413.641 kb on + strand, within LRK53_RS10815 at 2413.642 kb on - strand, within LRK53_RS10815 at 2413.642 kb on - strand, within LRK53_RS10815 at 2413.642 kb on - strand, within LRK53_RS10815 at 2413.717 kb on + strand, within LRK53_RS10815 at 2413.717 kb on + strand, within LRK53_RS10815 at 2413.718 kb on - strand, within LRK53_RS10815 at 2413.718 kb on - strand, within LRK53_RS10815 at 2413.721 kb on + strand, within LRK53_RS10815 at 2413.721 kb on + strand, within LRK53_RS10815 at 2413.722 kb on - strand, within LRK53_RS10815 at 2413.722 kb on - strand, within LRK53_RS10815 at 2413.722 kb on - strand, within LRK53_RS10815 at 2413.744 kb on + strand, within LRK53_RS10815 at 2413.789 kb on + strand, within LRK53_RS10815 at 2413.790 kb on - strand, within LRK53_RS10815 at 2413.790 kb on - strand, within LRK53_RS10815 at 2413.923 kb on + strand, within LRK53_RS10815 at 2413.923 kb on + strand, within LRK53_RS10815 at 2413.924 kb on - strand, within LRK53_RS10815 at 2413.945 kb on + strand, within LRK53_RS10815 at 2413.946 kb on - strand, within LRK53_RS10815 at 2414.096 kb on + strand, within LRK53_RS10815 at 2414.097 kb on - strand, within LRK53_RS10815
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,413,570 + LRK53_RS10815 0.37 -0.8 2,413,641 + LRK53_RS10815 0.43 -0.9 2,413,641 + LRK53_RS10815 0.43 +0.3 2,413,642 - LRK53_RS10815 0.43 -1.5 2,413,642 - LRK53_RS10815 0.43 +1.5 2,413,642 - LRK53_RS10815 0.43 -2.3 2,413,717 + LRK53_RS10815 0.49 -0.9 2,413,717 + LRK53_RS10815 0.49 -1.7 2,413,718 - LRK53_RS10815 0.49 +0.0 2,413,718 - LRK53_RS10815 0.49 -2.3 2,413,721 + LRK53_RS10815 0.50 +0.2 2,413,721 + LRK53_RS10815 0.50 -0.4 2,413,722 - LRK53_RS10815 0.50 +0.1 2,413,722 - LRK53_RS10815 0.50 -1.2 2,413,722 - LRK53_RS10815 0.50 -2.1 2,413,744 + LRK53_RS10815 0.51 -1.1 2,413,789 + LRK53_RS10815 0.55 -0.8 2,413,790 - LRK53_RS10815 0.55 +1.9 2,413,790 - LRK53_RS10815 0.55 +0.6 2,413,923 + LRK53_RS10815 0.67 -1.5 2,413,923 + LRK53_RS10815 0.67 -0.3 2,413,924 - LRK53_RS10815 0.67 -1.3 2,413,945 + LRK53_RS10815 0.69 -1.6 2,413,946 - LRK53_RS10815 0.69 -0.5 2,414,096 + LRK53_RS10815 0.82 -1.5 2,414,097 - LRK53_RS10815 0.82 -1.2
Or see this region's nucleotide sequence