Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10810

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS10795 and LRK53_RS10800 are separated by 11 nucleotidesLRK53_RS10800 and LRK53_RS10805 are separated by 69 nucleotidesLRK53_RS10805 and LRK53_RS10810 are separated by 90 nucleotidesLRK53_RS10810 and LRK53_RS10815 are separated by 38 nucleotides LRK53_RS10795: LRK53_RS10795 - HigA family addiction module antitoxin, at 2,410,424 to 2,411,539 _RS10795 LRK53_RS10800: LRK53_RS10800 - hypothetical protein, at 2,411,551 to 2,412,030 _RS10800 LRK53_RS10805: LRK53_RS10805 - hypothetical protein, at 2,412,100 to 2,412,393 _RS10805 LRK53_RS10810: LRK53_RS10810 - cation transporter, at 2,412,484 to 2,413,101 _RS10810 LRK53_RS10815: LRK53_RS10815 - hypothetical protein, at 2,413,140 to 2,414,312 _RS10815 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1 2at 2413.570 kb on + strand, within LRK53_RS10815at 2413.641 kb on + strand, within LRK53_RS10815at 2413.641 kb on + strand, within LRK53_RS10815at 2413.642 kb on - strand, within LRK53_RS10815at 2413.642 kb on - strand, within LRK53_RS10815at 2413.642 kb on - strand, within LRK53_RS10815at 2413.717 kb on + strand, within LRK53_RS10815at 2413.717 kb on + strand, within LRK53_RS10815at 2413.718 kb on - strand, within LRK53_RS10815at 2413.718 kb on - strand, within LRK53_RS10815at 2413.721 kb on + strand, within LRK53_RS10815at 2413.721 kb on + strand, within LRK53_RS10815at 2413.722 kb on - strand, within LRK53_RS10815at 2413.722 kb on - strand, within LRK53_RS10815at 2413.722 kb on - strand, within LRK53_RS10815at 2413.744 kb on + strand, within LRK53_RS10815at 2413.789 kb on + strand, within LRK53_RS10815at 2413.790 kb on - strand, within LRK53_RS10815at 2413.790 kb on - strand, within LRK53_RS10815at 2413.923 kb on + strand, within LRK53_RS10815at 2413.923 kb on + strand, within LRK53_RS10815at 2413.924 kb on - strand, within LRK53_RS10815at 2413.945 kb on + strand, within LRK53_RS10815at 2413.946 kb on - strand, within LRK53_RS10815at 2414.096 kb on + strand, within LRK53_RS10815at 2414.097 kb on - strand, within LRK53_RS10815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
remove
2,413,570 + LRK53_RS10815 0.37 -0.8
2,413,641 + LRK53_RS10815 0.43 -0.9
2,413,641 + LRK53_RS10815 0.43 +0.3
2,413,642 - LRK53_RS10815 0.43 -1.5
2,413,642 - LRK53_RS10815 0.43 +1.5
2,413,642 - LRK53_RS10815 0.43 -2.3
2,413,717 + LRK53_RS10815 0.49 -0.9
2,413,717 + LRK53_RS10815 0.49 -1.7
2,413,718 - LRK53_RS10815 0.49 +0.0
2,413,718 - LRK53_RS10815 0.49 -2.3
2,413,721 + LRK53_RS10815 0.50 +0.2
2,413,721 + LRK53_RS10815 0.50 -0.4
2,413,722 - LRK53_RS10815 0.50 +0.1
2,413,722 - LRK53_RS10815 0.50 -1.2
2,413,722 - LRK53_RS10815 0.50 -2.1
2,413,744 + LRK53_RS10815 0.51 -1.1
2,413,789 + LRK53_RS10815 0.55 -0.8
2,413,790 - LRK53_RS10815 0.55 +1.9
2,413,790 - LRK53_RS10815 0.55 +0.6
2,413,923 + LRK53_RS10815 0.67 -1.5
2,413,923 + LRK53_RS10815 0.67 -0.3
2,413,924 - LRK53_RS10815 0.67 -1.3
2,413,945 + LRK53_RS10815 0.69 -1.6
2,413,946 - LRK53_RS10815 0.69 -0.5
2,414,096 + LRK53_RS10815 0.82 -1.5
2,414,097 - LRK53_RS10815 0.82 -1.2

Or see this region's nucleotide sequence