Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09735

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09730 and LRK53_RS09735 are separated by 100 nucleotidesLRK53_RS09735 and LRK53_RS09740 are separated by 107 nucleotidesLRK53_RS09740 and LRK53_RS09745 are separated by 79 nucleotides LRK53_RS09730: LRK53_RS09730 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,188,424 to 2,190,694 _RS09730 LRK53_RS09735: LRK53_RS09735 - translation initiation factor IF-1, at 2,190,795 to 2,191,013 _RS09735 LRK53_RS09740: LRK53_RS09740 - polyhydroxyalkanoic acid system family protein, at 2,191,121 to 2,191,396 _RS09740 LRK53_RS09745: LRK53_RS09745 - FHA domain-containing protein, at 2,191,476 to 2,192,243 _RS09745 Position (kb) 2190 2191 2192Strain fitness (log2 ratio) -3 -2 -1 0 1at 2189.996 kb on + strand, within LRK53_RS09730at 2189.996 kb on + strand, within LRK53_RS09730at 2189.997 kb on - strand, within LRK53_RS09730at 2189.997 kb on - strand, within LRK53_RS09730at 2190.044 kb on + strand, within LRK53_RS09730at 2190.796 kb on + strandat 2190.796 kb on + strandat 2190.796 kb on + strandat 2190.796 kb on + strandat 2190.796 kb on + strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2190.797 kb on - strandat 2191.423 kb on + strandat 2191.423 kb on + strandat 2191.424 kb on - strandat 2191.424 kb on - strandat 2191.424 kb on - strandat 2191.424 kb on - strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strandat 2191.444 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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2,189,996 + LRK53_RS09730 0.69 -0.5
2,189,996 + LRK53_RS09730 0.69 -0.6
2,189,997 - LRK53_RS09730 0.69 +1.0
2,189,997 - LRK53_RS09730 0.69 -0.2
2,190,044 + LRK53_RS09730 0.71 -0.6
2,190,796 + -1.2
2,190,796 + -3.3
2,190,796 + -1.6
2,190,796 + +0.8
2,190,796 + -0.3
2,190,797 - -0.6
2,190,797 - -0.5
2,190,797 - -1.1
2,190,797 - -1.9
2,190,797 - -0.5
2,190,797 - -1.0
2,190,797 - -1.3
2,190,797 - -1.2
2,190,797 - -0.8
2,190,797 - -0.3
2,191,423 + -0.3
2,191,423 + -0.4
2,191,424 - -0.5
2,191,424 - -1.8
2,191,424 - -1.3
2,191,424 - -0.4
2,191,444 + -0.9
2,191,444 + +0.0
2,191,444 + -1.0
2,191,444 + +0.1
2,191,444 + -0.6
2,191,444 + -0.7
2,191,444 + +0.2
2,191,444 + -1.8
2,191,444 + -1.3

Or see this region's nucleotide sequence