Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09730 and LRK53_RS09735 are separated by 100 nucleotides LRK53_RS09735 and LRK53_RS09740 are separated by 107 nucleotides LRK53_RS09740 and LRK53_RS09745 are separated by 79 nucleotides
LRK53_RS09730: LRK53_RS09730 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,188,424 to 2,190,694
_RS09730
LRK53_RS09735: LRK53_RS09735 - translation initiation factor IF-1, at 2,190,795 to 2,191,013
_RS09735
LRK53_RS09740: LRK53_RS09740 - polyhydroxyalkanoic acid system family protein, at 2,191,121 to 2,191,396
_RS09740
LRK53_RS09745: LRK53_RS09745 - FHA domain-containing protein, at 2,191,476 to 2,192,243
_RS09745
Position (kb)
2190
2191
2192 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2189.996 kb on + strand, within LRK53_RS09730 at 2189.996 kb on + strand, within LRK53_RS09730 at 2189.997 kb on - strand, within LRK53_RS09730 at 2189.997 kb on - strand, within LRK53_RS09730 at 2190.044 kb on + strand, within LRK53_RS09730 at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2191.423 kb on + strand at 2191.423 kb on + strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,189,996 + LRK53_RS09730 0.69 -0.5 2,189,996 + LRK53_RS09730 0.69 -0.6 2,189,997 - LRK53_RS09730 0.69 +1.0 2,189,997 - LRK53_RS09730 0.69 -0.2 2,190,044 + LRK53_RS09730 0.71 -0.6 2,190,796 + -1.2 2,190,796 + -3.3 2,190,796 + -1.6 2,190,796 + +0.8 2,190,796 + -0.3 2,190,797 - -0.6 2,190,797 - -0.5 2,190,797 - -1.1 2,190,797 - -1.9 2,190,797 - -0.5 2,190,797 - -1.0 2,190,797 - -1.3 2,190,797 - -1.2 2,190,797 - -0.8 2,190,797 - -0.3 2,191,423 + -0.3 2,191,423 + -0.4 2,191,424 - -0.5 2,191,424 - -1.8 2,191,424 - -1.3 2,191,424 - -0.4 2,191,444 + -0.9 2,191,444 + +0.0 2,191,444 + -1.0 2,191,444 + +0.1 2,191,444 + -0.6 2,191,444 + -0.7 2,191,444 + +0.2 2,191,444 + -1.8 2,191,444 + -1.3
Or see this region's nucleotide sequence