Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09690

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS09680 and LRK53_RS09685 overlap by 8 nucleotidesLRK53_RS09685 and LRK53_RS09690 overlap by 1 nucleotidesLRK53_RS09690 and LRK53_RS09695 are separated by 74 nucleotides LRK53_RS09680: LRK53_RS09680 - phosphate ABC transporter ATP-binding protein PstB, at 2,179,397 to 2,180,206 _RS09680 LRK53_RS09685: LRK53_RS09685 - phosphate ABC transporter permease PstA, at 2,180,199 to 2,181,065 _RS09685 LRK53_RS09690: LRK53_RS09690 - phosphate ABC transporter permease subunit PstC, at 2,181,065 to 2,182,084 _RS09690 LRK53_RS09695: LRK53_RS09695 - phosphate ABC transporter substrate-binding protein PstS, at 2,182,159 to 2,183,190 _RS09695 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -2 -1 0 1 2at 2181.102 kb on - strandat 2182.096 kb on - strandat 2182.096 kb on - strandat 2182.096 kb on - strandat 2182.096 kb on - strandat 2182.105 kb on - strandat 2182.185 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
remove
2,181,102 - +2.3
2,182,096 - -1.5
2,182,096 - -1.9
2,182,096 - -0.5
2,182,096 - -0.2
2,182,105 - -0.4
2,182,185 - +1.3

Or see this region's nucleotide sequence