Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09670 and LRK53_RS09675 are separated by 105 nucleotides LRK53_RS09675 and LRK53_RS09680 are separated by 141 nucleotides LRK53_RS09680 and LRK53_RS09685 overlap by 8 nucleotides LRK53_RS09685 and LRK53_RS09690 overlap by 1 nucleotides
LRK53_RS09670: LRK53_RS09670 - quaternary ammonium compound efflux SMR transporter SugE, at 2,178,110 to 2,178,427
_RS09670
LRK53_RS09675: LRK53_RS09675 - phosphate signaling complex protein PhoU, at 2,178,533 to 2,179,255
_RS09675
LRK53_RS09680: LRK53_RS09680 - phosphate ABC transporter ATP-binding protein PstB, at 2,179,397 to 2,180,206
_RS09680
LRK53_RS09685: LRK53_RS09685 - phosphate ABC transporter permease PstA, at 2,180,199 to 2,181,065
_RS09685
LRK53_RS09690: LRK53_RS09690 - phosphate ABC transporter permease subunit PstC, at 2,181,065 to 2,182,084
_RS09690
Position (kb)
2179
2180
2181 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2178.415 kb on + strand at 2178.415 kb on + strand at 2178.416 kb on - strand at 2178.439 kb on + strand at 2178.440 kb on - strand at 2178.440 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2179.258 kb on - strand at 2181.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,178,415 + -1.3 2,178,415 + -0.8 2,178,416 - -2.3 2,178,439 + -1.0 2,178,440 - +1.1 2,178,440 - +0.7 2,179,258 - +0.5 2,179,258 - -1.9 2,179,258 - -0.7 2,179,258 - -3.6 2,179,258 - -0.3 2,179,258 - -0.2 2,179,258 - -0.6 2,179,258 - -1.0 2,179,258 - -0.6 2,179,258 - -0.5 2,179,258 - -0.5 2,179,258 - -0.3 2,181,102 - +2.3
Or see this region's nucleotide sequence