Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09680

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09670 and LRK53_RS09675 are separated by 105 nucleotidesLRK53_RS09675 and LRK53_RS09680 are separated by 141 nucleotidesLRK53_RS09680 and LRK53_RS09685 overlap by 8 nucleotidesLRK53_RS09685 and LRK53_RS09690 overlap by 1 nucleotides LRK53_RS09670: LRK53_RS09670 - quaternary ammonium compound efflux SMR transporter SugE, at 2,178,110 to 2,178,427 _RS09670 LRK53_RS09675: LRK53_RS09675 - phosphate signaling complex protein PhoU, at 2,178,533 to 2,179,255 _RS09675 LRK53_RS09680: LRK53_RS09680 - phosphate ABC transporter ATP-binding protein PstB, at 2,179,397 to 2,180,206 _RS09680 LRK53_RS09685: LRK53_RS09685 - phosphate ABC transporter permease PstA, at 2,180,199 to 2,181,065 _RS09685 LRK53_RS09690: LRK53_RS09690 - phosphate ABC transporter permease subunit PstC, at 2,181,065 to 2,182,084 _RS09690 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2178.415 kb on + strandat 2178.415 kb on + strandat 2178.416 kb on - strandat 2178.439 kb on + strandat 2178.440 kb on - strandat 2178.440 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2179.258 kb on - strandat 2181.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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2,178,415 + -1.3
2,178,415 + -0.8
2,178,416 - -2.3
2,178,439 + -1.0
2,178,440 - +1.1
2,178,440 - +0.7
2,179,258 - +0.5
2,179,258 - -1.9
2,179,258 - -0.7
2,179,258 - -3.6
2,179,258 - -0.3
2,179,258 - -0.2
2,179,258 - -0.6
2,179,258 - -1.0
2,179,258 - -0.6
2,179,258 - -0.5
2,179,258 - -0.5
2,179,258 - -0.3
2,181,102 - +2.3

Or see this region's nucleotide sequence