Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09090 and LRK53_RS09095 are separated by 121 nucleotides LRK53_RS09095 and LRK53_RS09100 are separated by 12 nucleotides
LRK53_RS09090: LRK53_RS09090 - polyribonucleotide nucleotidyltransferase, at 2,032,026 to 2,034,131
_RS09090
LRK53_RS09095: LRK53_RS09095 - pha synthase subunit protein, at 2,034,253 to 2,035,284
_RS09095
LRK53_RS09100: LRK53_RS09100 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 2,035,297 to 2,036,364
_RS09100
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2033.679 kb on + strand, within LRK53_RS09090 at 2033.679 kb on + strand, within LRK53_RS09090 at 2033.679 kb on + strand, within LRK53_RS09090 at 2033.679 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.901 kb on + strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2033.902 kb on - strand, within LRK53_RS09090 at 2034.220 kb on + strand at 2034.220 kb on + strand at 2034.221 kb on - strand at 2034.221 kb on - strand at 2034.221 kb on - strand at 2034.221 kb on - strand at 2034.221 kb on - strand at 2034.286 kb on + strand at 2034.286 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.436 kb on - strand, within LRK53_RS09100 at 2035.601 kb on - strand, within LRK53_RS09100 at 2035.601 kb on - strand, within LRK53_RS09100 at 2035.657 kb on + strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.970 kb on - strand, within LRK53_RS09100 at 2035.970 kb on - strand, within LRK53_RS09100 at 2036.174 kb on + strand, within LRK53_RS09100 at 2036.175 kb on - strand, within LRK53_RS09100
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,033,679 + LRK53_RS09090 0.78 +2.8 2,033,679 + LRK53_RS09090 0.78 +1.8 2,033,679 + LRK53_RS09090 0.78 +0.2 2,033,679 + LRK53_RS09090 0.78 +0.0 2,033,901 + LRK53_RS09090 0.89 +0.5 2,033,901 + LRK53_RS09090 0.89 +0.3 2,033,901 + LRK53_RS09090 0.89 +1.3 2,033,901 + LRK53_RS09090 0.89 +0.8 2,033,901 + LRK53_RS09090 0.89 -0.2 2,033,901 + LRK53_RS09090 0.89 -0.2 2,033,901 + LRK53_RS09090 0.89 +0.8 2,033,901 + LRK53_RS09090 0.89 +1.6 2,033,901 + LRK53_RS09090 0.89 -0.1 2,033,901 + LRK53_RS09090 0.89 -0.5 2,033,901 + LRK53_RS09090 0.89 -1.6 2,033,901 + LRK53_RS09090 0.89 +2.0 2,033,901 + LRK53_RS09090 0.89 -0.5 2,033,901 + LRK53_RS09090 0.89 +1.8 2,033,901 + LRK53_RS09090 0.89 +0.5 2,033,901 + LRK53_RS09090 0.89 -0.8 2,033,901 + LRK53_RS09090 0.89 +0.8 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 -0.1 2,033,901 + LRK53_RS09090 0.89 +0.9 2,033,901 + LRK53_RS09090 0.89 -0.5 2,033,901 + LRK53_RS09090 0.89 +0.8 2,033,901 + LRK53_RS09090 0.89 +0.0 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +0.0 2,033,901 + LRK53_RS09090 0.89 +1.0 2,033,901 + LRK53_RS09090 0.89 -0.7 2,033,901 + LRK53_RS09090 0.89 +0.2 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +0.5 2,033,901 + LRK53_RS09090 0.89 +0.0 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +1.2 2,033,901 + LRK53_RS09090 0.89 +1.8 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +1.3 2,033,901 + LRK53_RS09090 0.89 +1.2 2,033,901 + LRK53_RS09090 0.89 +0.9 2,033,901 + LRK53_RS09090 0.89 -1.1 2,033,901 + LRK53_RS09090 0.89 -0.7 2,033,901 + LRK53_RS09090 0.89 +0.2 2,033,901 + LRK53_RS09090 0.89 +0.5 2,033,901 + LRK53_RS09090 0.89 -0.8 2,033,901 + LRK53_RS09090 0.89 -0.4 2,033,901 + LRK53_RS09090 0.89 +0.8 2,033,901 + LRK53_RS09090 0.89 +2.8 2,033,901 + LRK53_RS09090 0.89 +1.2 2,033,901 + LRK53_RS09090 0.89 +1.5 2,033,901 + LRK53_RS09090 0.89 -0.3 2,033,901 + LRK53_RS09090 0.89 +3.8 2,033,901 + LRK53_RS09090 0.89 +0.4 2,033,902 - LRK53_RS09090 0.89 -1.2 2,033,902 - LRK53_RS09090 0.89 +1.2 2,033,902 - LRK53_RS09090 0.89 -1.1 2,033,902 - LRK53_RS09090 0.89 -1.0 2,033,902 - LRK53_RS09090 0.89 -0.4 2,033,902 - LRK53_RS09090 0.89 +0.3 2,033,902 - LRK53_RS09090 0.89 +0.8 2,033,902 - LRK53_RS09090 0.89 -0.8 2,033,902 - LRK53_RS09090 0.89 -0.2 2,033,902 - LRK53_RS09090 0.89 -0.9 2,033,902 - LRK53_RS09090 0.89 +0.6 2,033,902 - LRK53_RS09090 0.89 -1.1 2,033,902 - LRK53_RS09090 0.89 -0.2 2,033,902 - LRK53_RS09090 0.89 -0.3 2,033,902 - LRK53_RS09090 0.89 -0.1 2,033,902 - LRK53_RS09090 0.89 -0.8 2,033,902 - LRK53_RS09090 0.89 +0.0 2,033,902 - LRK53_RS09090 0.89 +0.4 2,033,902 - LRK53_RS09090 0.89 +2.8 2,033,902 - LRK53_RS09090 0.89 +1.1 2,033,902 - LRK53_RS09090 0.89 +1.8 2,033,902 - LRK53_RS09090 0.89 +1.8 2,033,902 - LRK53_RS09090 0.89 +0.5 2,033,902 - LRK53_RS09090 0.89 +0.9 2,033,902 - LRK53_RS09090 0.89 -1.1 2,033,902 - LRK53_RS09090 0.89 +0.0 2,033,902 - LRK53_RS09090 0.89 +1.0 2,033,902 - LRK53_RS09090 0.89 -1.7 2,033,902 - LRK53_RS09090 0.89 -0.6 2,033,902 - LRK53_RS09090 0.89 -0.5 2,033,902 - LRK53_RS09090 0.89 -0.7 2,033,902 - LRK53_RS09090 0.89 -0.9 2,033,902 - LRK53_RS09090 0.89 -1.2 2,033,902 - LRK53_RS09090 0.89 +0.2 2,033,902 - LRK53_RS09090 0.89 +0.0 2,033,902 - LRK53_RS09090 0.89 +0.9 2,033,902 - LRK53_RS09090 0.89 +0.5 2,033,902 - LRK53_RS09090 0.89 -0.5 2,033,902 - LRK53_RS09090 0.89 +1.8 2,033,902 - LRK53_RS09090 0.89 +0.5 2,033,902 - LRK53_RS09090 0.89 +0.8 2,033,902 - LRK53_RS09090 0.89 -0.2 2,033,902 - LRK53_RS09090 0.89 -1.3 2,033,902 - LRK53_RS09090 0.89 -0.8 2,033,902 - LRK53_RS09090 0.89 +0.1 2,033,902 - LRK53_RS09090 0.89 -0.1 2,033,902 - LRK53_RS09090 0.89 +0.0 2,033,902 - LRK53_RS09090 0.89 +2.8 2,033,902 - LRK53_RS09090 0.89 +0.3 2,033,902 - LRK53_RS09090 0.89 +0.8 2,033,902 - LRK53_RS09090 0.89 +0.1 2,033,902 - LRK53_RS09090 0.89 +0.2 2,033,902 - LRK53_RS09090 0.89 -0.2 2,033,902 - LRK53_RS09090 0.89 +0.1 2,033,902 - LRK53_RS09090 0.89 +0.1 2,033,902 - LRK53_RS09090 0.89 +1.2 2,033,902 - LRK53_RS09090 0.89 +1.2 2,033,902 - LRK53_RS09090 0.89 +3.4 2,033,902 - LRK53_RS09090 0.89 +0.8 2,033,902 - LRK53_RS09090 0.89 -0.4 2,033,902 - LRK53_RS09090 0.89 -0.0 2,033,902 - LRK53_RS09090 0.89 +1.8 2,033,902 - LRK53_RS09090 0.89 -2.3 2,033,902 - LRK53_RS09090 0.89 +2.8 2,033,902 - LRK53_RS09090 0.89 -0.6 2,033,902 - LRK53_RS09090 0.89 +1.2 2,033,902 - LRK53_RS09090 0.89 +0.1 2,033,902 - LRK53_RS09090 0.89 +0.2 2,034,220 + -0.4 2,034,220 + -2.4 2,034,221 - -0.1 2,034,221 - -1.2 2,034,221 - -0.3 2,034,221 - -3.1 2,034,221 - -1.3 2,034,286 + +0.0 2,034,286 + +0.5 2,035,282 + +1.1 2,035,282 + -3.8 2,035,282 + -1.3 2,035,282 + +1.1 2,035,282 + -1.4 2,035,282 + -1.3 2,035,282 + -1.3 2,035,282 + -0.3 2,035,283 - -1.3 2,035,283 - -1.3 2,035,283 - -0.8 2,035,283 - -2.6 2,035,283 - -1.2 2,035,283 - -0.8 2,035,283 - -3.1 2,035,436 - LRK53_RS09100 0.13 +1.6 2,035,601 - LRK53_RS09100 0.28 -1.0 2,035,601 - LRK53_RS09100 0.28 +0.6 2,035,657 + LRK53_RS09100 0.34 -0.3 2,035,925 - LRK53_RS09100 0.59 -0.5 2,035,925 - LRK53_RS09100 0.59 -0.1 2,035,925 - LRK53_RS09100 0.59 -1.0 2,035,925 - LRK53_RS09100 0.59 +0.2 2,035,970 - LRK53_RS09100 0.63 -0.6 2,035,970 - LRK53_RS09100 0.63 -0.9 2,036,174 + LRK53_RS09100 0.82 -2.4 2,036,175 - LRK53_RS09100 0.82 -1.5
Or see this region's nucleotide sequence