Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09095

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09090 and LRK53_RS09095 are separated by 121 nucleotidesLRK53_RS09095 and LRK53_RS09100 are separated by 12 nucleotides LRK53_RS09090: LRK53_RS09090 - polyribonucleotide nucleotidyltransferase, at 2,032,026 to 2,034,131 _RS09090 LRK53_RS09095: LRK53_RS09095 - pha synthase subunit protein, at 2,034,253 to 2,035,284 _RS09095 LRK53_RS09100: LRK53_RS09100 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 2,035,297 to 2,036,364 _RS09100 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2033.679 kb on + strand, within LRK53_RS09090at 2033.679 kb on + strand, within LRK53_RS09090at 2033.679 kb on + strand, within LRK53_RS09090at 2033.679 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.901 kb on + strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2033.902 kb on - strand, within LRK53_RS09090at 2034.220 kb on + strandat 2034.220 kb on + strandat 2034.221 kb on - strandat 2034.221 kb on - strandat 2034.221 kb on - strandat 2034.221 kb on - strandat 2034.221 kb on - strandat 2034.286 kb on + strandat 2034.286 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.436 kb on - strand, within LRK53_RS09100at 2035.601 kb on - strand, within LRK53_RS09100at 2035.601 kb on - strand, within LRK53_RS09100at 2035.657 kb on + strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.970 kb on - strand, within LRK53_RS09100at 2035.970 kb on - strand, within LRK53_RS09100at 2036.174 kb on + strand, within LRK53_RS09100at 2036.175 kb on - strand, within LRK53_RS09100

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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2,033,679 + LRK53_RS09090 0.78 +2.8
2,033,679 + LRK53_RS09090 0.78 +1.8
2,033,679 + LRK53_RS09090 0.78 +0.2
2,033,679 + LRK53_RS09090 0.78 +0.0
2,033,901 + LRK53_RS09090 0.89 +0.5
2,033,901 + LRK53_RS09090 0.89 +0.3
2,033,901 + LRK53_RS09090 0.89 +1.3
2,033,901 + LRK53_RS09090 0.89 +0.8
2,033,901 + LRK53_RS09090 0.89 -0.2
2,033,901 + LRK53_RS09090 0.89 -0.2
2,033,901 + LRK53_RS09090 0.89 +0.8
2,033,901 + LRK53_RS09090 0.89 +1.6
2,033,901 + LRK53_RS09090 0.89 -0.1
2,033,901 + LRK53_RS09090 0.89 -0.5
2,033,901 + LRK53_RS09090 0.89 -1.6
2,033,901 + LRK53_RS09090 0.89 +2.0
2,033,901 + LRK53_RS09090 0.89 -0.5
2,033,901 + LRK53_RS09090 0.89 +1.8
2,033,901 + LRK53_RS09090 0.89 +0.5
2,033,901 + LRK53_RS09090 0.89 -0.8
2,033,901 + LRK53_RS09090 0.89 +0.8
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 -0.1
2,033,901 + LRK53_RS09090 0.89 +0.9
2,033,901 + LRK53_RS09090 0.89 -0.5
2,033,901 + LRK53_RS09090 0.89 +0.8
2,033,901 + LRK53_RS09090 0.89 +0.0
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +0.0
2,033,901 + LRK53_RS09090 0.89 +1.0
2,033,901 + LRK53_RS09090 0.89 -0.7
2,033,901 + LRK53_RS09090 0.89 +0.2
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +0.5
2,033,901 + LRK53_RS09090 0.89 +0.0
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +1.2
2,033,901 + LRK53_RS09090 0.89 +1.8
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +1.3
2,033,901 + LRK53_RS09090 0.89 +1.2
2,033,901 + LRK53_RS09090 0.89 +0.9
2,033,901 + LRK53_RS09090 0.89 -1.1
2,033,901 + LRK53_RS09090 0.89 -0.7
2,033,901 + LRK53_RS09090 0.89 +0.2
2,033,901 + LRK53_RS09090 0.89 +0.5
2,033,901 + LRK53_RS09090 0.89 -0.8
2,033,901 + LRK53_RS09090 0.89 -0.4
2,033,901 + LRK53_RS09090 0.89 +0.8
2,033,901 + LRK53_RS09090 0.89 +2.8
2,033,901 + LRK53_RS09090 0.89 +1.2
2,033,901 + LRK53_RS09090 0.89 +1.5
2,033,901 + LRK53_RS09090 0.89 -0.3
2,033,901 + LRK53_RS09090 0.89 +3.8
2,033,901 + LRK53_RS09090 0.89 +0.4
2,033,902 - LRK53_RS09090 0.89 -1.2
2,033,902 - LRK53_RS09090 0.89 +1.2
2,033,902 - LRK53_RS09090 0.89 -1.1
2,033,902 - LRK53_RS09090 0.89 -1.0
2,033,902 - LRK53_RS09090 0.89 -0.4
2,033,902 - LRK53_RS09090 0.89 +0.3
2,033,902 - LRK53_RS09090 0.89 +0.8
2,033,902 - LRK53_RS09090 0.89 -0.8
2,033,902 - LRK53_RS09090 0.89 -0.2
2,033,902 - LRK53_RS09090 0.89 -0.9
2,033,902 - LRK53_RS09090 0.89 +0.6
2,033,902 - LRK53_RS09090 0.89 -1.1
2,033,902 - LRK53_RS09090 0.89 -0.2
2,033,902 - LRK53_RS09090 0.89 -0.3
2,033,902 - LRK53_RS09090 0.89 -0.1
2,033,902 - LRK53_RS09090 0.89 -0.8
2,033,902 - LRK53_RS09090 0.89 +0.0
2,033,902 - LRK53_RS09090 0.89 +0.4
2,033,902 - LRK53_RS09090 0.89 +2.8
2,033,902 - LRK53_RS09090 0.89 +1.1
2,033,902 - LRK53_RS09090 0.89 +1.8
2,033,902 - LRK53_RS09090 0.89 +1.8
2,033,902 - LRK53_RS09090 0.89 +0.5
2,033,902 - LRK53_RS09090 0.89 +0.9
2,033,902 - LRK53_RS09090 0.89 -1.1
2,033,902 - LRK53_RS09090 0.89 +0.0
2,033,902 - LRK53_RS09090 0.89 +1.0
2,033,902 - LRK53_RS09090 0.89 -1.7
2,033,902 - LRK53_RS09090 0.89 -0.6
2,033,902 - LRK53_RS09090 0.89 -0.5
2,033,902 - LRK53_RS09090 0.89 -0.7
2,033,902 - LRK53_RS09090 0.89 -0.9
2,033,902 - LRK53_RS09090 0.89 -1.2
2,033,902 - LRK53_RS09090 0.89 +0.2
2,033,902 - LRK53_RS09090 0.89 +0.0
2,033,902 - LRK53_RS09090 0.89 +0.9
2,033,902 - LRK53_RS09090 0.89 +0.5
2,033,902 - LRK53_RS09090 0.89 -0.5
2,033,902 - LRK53_RS09090 0.89 +1.8
2,033,902 - LRK53_RS09090 0.89 +0.5
2,033,902 - LRK53_RS09090 0.89 +0.8
2,033,902 - LRK53_RS09090 0.89 -0.2
2,033,902 - LRK53_RS09090 0.89 -1.3
2,033,902 - LRK53_RS09090 0.89 -0.8
2,033,902 - LRK53_RS09090 0.89 +0.1
2,033,902 - LRK53_RS09090 0.89 -0.1
2,033,902 - LRK53_RS09090 0.89 +0.0
2,033,902 - LRK53_RS09090 0.89 +2.8
2,033,902 - LRK53_RS09090 0.89 +0.3
2,033,902 - LRK53_RS09090 0.89 +0.8
2,033,902 - LRK53_RS09090 0.89 +0.1
2,033,902 - LRK53_RS09090 0.89 +0.2
2,033,902 - LRK53_RS09090 0.89 -0.2
2,033,902 - LRK53_RS09090 0.89 +0.1
2,033,902 - LRK53_RS09090 0.89 +0.1
2,033,902 - LRK53_RS09090 0.89 +1.2
2,033,902 - LRK53_RS09090 0.89 +1.2
2,033,902 - LRK53_RS09090 0.89 +3.4
2,033,902 - LRK53_RS09090 0.89 +0.8
2,033,902 - LRK53_RS09090 0.89 -0.4
2,033,902 - LRK53_RS09090 0.89 -0.0
2,033,902 - LRK53_RS09090 0.89 +1.8
2,033,902 - LRK53_RS09090 0.89 -2.3
2,033,902 - LRK53_RS09090 0.89 +2.8
2,033,902 - LRK53_RS09090 0.89 -0.6
2,033,902 - LRK53_RS09090 0.89 +1.2
2,033,902 - LRK53_RS09090 0.89 +0.1
2,033,902 - LRK53_RS09090 0.89 +0.2
2,034,220 + -0.4
2,034,220 + -2.4
2,034,221 - -0.1
2,034,221 - -1.2
2,034,221 - -0.3
2,034,221 - -3.1
2,034,221 - -1.3
2,034,286 + +0.0
2,034,286 + +0.5
2,035,282 + +1.1
2,035,282 + -3.8
2,035,282 + -1.3
2,035,282 + +1.1
2,035,282 + -1.4
2,035,282 + -1.3
2,035,282 + -1.3
2,035,282 + -0.3
2,035,283 - -1.3
2,035,283 - -1.3
2,035,283 - -0.8
2,035,283 - -2.6
2,035,283 - -1.2
2,035,283 - -0.8
2,035,283 - -3.1
2,035,436 - LRK53_RS09100 0.13 +1.6
2,035,601 - LRK53_RS09100 0.28 -1.0
2,035,601 - LRK53_RS09100 0.28 +0.6
2,035,657 + LRK53_RS09100 0.34 -0.3
2,035,925 - LRK53_RS09100 0.59 -0.5
2,035,925 - LRK53_RS09100 0.59 -0.1
2,035,925 - LRK53_RS09100 0.59 -1.0
2,035,925 - LRK53_RS09100 0.59 +0.2
2,035,970 - LRK53_RS09100 0.63 -0.6
2,035,970 - LRK53_RS09100 0.63 -0.9
2,036,174 + LRK53_RS09100 0.82 -2.4
2,036,175 - LRK53_RS09100 0.82 -1.5

Or see this region's nucleotide sequence