Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08975 and LRK53_RS08980 are separated by 9 nucleotides LRK53_RS08980 and LRK53_RS08985 overlap by 4 nucleotides LRK53_RS08985 and LRK53_RS08990 are separated by 4 nucleotides LRK53_RS08990 and LRK53_RS08995 are separated by 14 nucleotides
LRK53_RS08975: LRK53_RS08975 - NADH-quinone oxidoreductase subunit NuoI, at 2,008,731 to 2,009,222
_RS08975
LRK53_RS08980: LRK53_RS08980 - NADH-quinone oxidoreductase subunit J, at 2,009,232 to 2,009,885
_RS08980
LRK53_RS08985: LRK53_RS08985 - NADH-quinone oxidoreductase subunit NuoK, at 2,009,882 to 2,010,187
_RS08985
LRK53_RS08990: LRK53_RS08990 - NADH-quinone oxidoreductase subunit L, at 2,010,192 to 2,012,279
_RS08990
LRK53_RS08995: LRK53_RS08995 - NADH-quinone oxidoreductase subunit M, at 2,012,294 to 2,013,799
_RS08995
Position (kb) 2010
2011
2012
2013 Strain fitness (log2 ratio) -2
-1
0
1 at 2009.763 kb on + strand, within LRK53_RS08980 at 2009.808 kb on + strand, within LRK53_RS08980 at 2009.809 kb on + strand, within LRK53_RS08980 at 2009.809 kb on + strand, within LRK53_RS08980 at 2012.277 kb on + strand at 2012.277 kb on + strand at 2012.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,009,763 + LRK53_RS08980 0.81 -0.7 2,009,808 + LRK53_RS08980 0.88 -2.0 2,009,809 + LRK53_RS08980 0.88 -0.2 2,009,809 + LRK53_RS08980 0.88 -1.7 2,012,277 + -2.1 2,012,277 + +1.6 2,012,277 + -0.4
Or see this region's nucleotide sequence