Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08970

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS08965 and LRK53_RS08970 are separated by 5 nucleotidesLRK53_RS08970 and LRK53_RS08975 are separated by 3 nucleotidesLRK53_RS08975 and LRK53_RS08980 are separated by 9 nucleotides LRK53_RS08965: LRK53_RS08965 - NADH-quinone oxidoreductase subunit NuoG, at 2,005,342 to 2,007,669 _RS08965 LRK53_RS08970: LRK53_RS08970 - NADH-quinone oxidoreductase subunit NuoH, at 2,007,675 to 2,008,727 _RS08970 LRK53_RS08975: LRK53_RS08975 - NADH-quinone oxidoreductase subunit NuoI, at 2,008,731 to 2,009,222 _RS08975 LRK53_RS08980: LRK53_RS08980 - NADH-quinone oxidoreductase subunit J, at 2,009,232 to 2,009,885 _RS08980 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -2 -1 0 1at 2007.667 kb on + strandat 2007.667 kb on + strandat 2007.667 kb on + strandat 2007.667 kb on + strandat 2007.667 kb on + strandat 2007.667 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.692 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.695 kb on + strandat 2008.725 kb on + strandat 2008.725 kb on + strandat 2008.725 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
remove
2,007,667 + +1.2
2,007,667 + -0.3
2,007,667 + -1.4
2,007,667 + -0.8
2,007,667 + -0.6
2,007,667 + -0.5
2,008,692 + -2.2
2,008,692 + +0.5
2,008,692 + -1.1
2,008,692 + -0.4
2,008,692 + -1.5
2,008,692 + -0.5
2,008,692 + -1.4
2,008,692 + -0.9
2,008,692 + -0.3
2,008,695 + +0.0
2,008,695 + +0.2
2,008,695 + -2.4
2,008,695 + -0.9
2,008,695 + -1.3
2,008,695 + -1.0
2,008,725 + +0.4
2,008,725 + -2.4
2,008,725 + -2.4

Or see this region's nucleotide sequence