Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08965 and LRK53_RS08970 are separated by 5 nucleotides LRK53_RS08970 and LRK53_RS08975 are separated by 3 nucleotides LRK53_RS08975 and LRK53_RS08980 are separated by 9 nucleotides
LRK53_RS08965: LRK53_RS08965 - NADH-quinone oxidoreductase subunit NuoG, at 2,005,342 to 2,007,669
_RS08965
LRK53_RS08970: LRK53_RS08970 - NADH-quinone oxidoreductase subunit NuoH, at 2,007,675 to 2,008,727
_RS08970
LRK53_RS08975: LRK53_RS08975 - NADH-quinone oxidoreductase subunit NuoI, at 2,008,731 to 2,009,222
_RS08975
LRK53_RS08980: LRK53_RS08980 - NADH-quinone oxidoreductase subunit J, at 2,009,232 to 2,009,885
_RS08980
Position (kb)
2007
2008
2009 Strain fitness (log2 ratio)
-2
-1
0
1 at 2007.667 kb on + strand at 2007.667 kb on + strand at 2007.667 kb on + strand at 2007.667 kb on + strand at 2007.667 kb on + strand at 2007.667 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.692 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.695 kb on + strand at 2008.725 kb on + strand at 2008.725 kb on + strand at 2008.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 2,007,667 + +1.2 2,007,667 + -0.3 2,007,667 + -1.4 2,007,667 + -0.8 2,007,667 + -0.6 2,007,667 + -0.5 2,008,692 + -2.2 2,008,692 + +0.5 2,008,692 + -1.1 2,008,692 + -0.4 2,008,692 + -1.5 2,008,692 + -0.5 2,008,692 + -1.4 2,008,692 + -0.9 2,008,692 + -0.3 2,008,695 + +0.0 2,008,695 + +0.2 2,008,695 + -2.4 2,008,695 + -0.9 2,008,695 + -1.3 2,008,695 + -1.0 2,008,725 + +0.4 2,008,725 + -2.4 2,008,725 + -2.4
Or see this region's nucleotide sequence