Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07850 and LRK53_RS07855 are separated by 161 nucleotides LRK53_RS07855 and LRK53_RS07860 are separated by 88 nucleotides
LRK53_RS07850: LRK53_RS07850 - exodeoxyribonuclease V subunit gamma, at 1,754,900 to 1,758,352
_RS07850
LRK53_RS07855: LRK53_RS07855 - YciI family protein, at 1,758,514 to 1,758,933
_RS07855
LRK53_RS07860: LRK53_RS07860 - RNA polymerase sigma factor, at 1,759,022 to 1,760,299
_RS07860
Position (kb) 1758
1759 Strain fitness (log2 ratio) -2
-1
0
1 at 1758.388 kb on + strand at 1758.388 kb on + strand at 1758.388 kb on + strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.389 kb on - strand at 1758.601 kb on + strand, within LRK53_RS07855 at 1758.601 kb on + strand, within LRK53_RS07855 at 1758.601 kb on + strand, within LRK53_RS07855 at 1759.550 kb on + strand, within LRK53_RS07860 at 1759.550 kb on + strand, within LRK53_RS07860 at 1759.550 kb on + strand, within LRK53_RS07860 at 1759.550 kb on + strand, within LRK53_RS07860 at 1759.550 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.610 kb on + strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.611 kb on - strand, within LRK53_RS07860 at 1759.632 kb on - strand, within LRK53_RS07860 at 1759.671 kb on + strand, within LRK53_RS07860 at 1759.671 kb on + strand, within LRK53_RS07860
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,758,388 + -0.7 1,758,388 + -0.6 1,758,388 + -1.8 1,758,389 - -1.9 1,758,389 - -1.4 1,758,389 - +0.3 1,758,389 - -1.7 1,758,389 - -0.7 1,758,389 - -0.1 1,758,389 - -2.6 1,758,601 + LRK53_RS07855 0.21 +1.7 1,758,601 + LRK53_RS07855 0.21 +0.3 1,758,601 + LRK53_RS07855 0.21 -0.4 1,759,550 + LRK53_RS07860 0.41 -0.9 1,759,550 + LRK53_RS07860 0.41 -2.6 1,759,550 + LRK53_RS07860 0.41 -0.1 1,759,550 + LRK53_RS07860 0.41 +0.7 1,759,550 + LRK53_RS07860 0.41 -0.4 1,759,610 + LRK53_RS07860 0.46 +0.6 1,759,610 + LRK53_RS07860 0.46 +0.2 1,759,610 + LRK53_RS07860 0.46 +0.6 1,759,610 + LRK53_RS07860 0.46 -0.4 1,759,610 + LRK53_RS07860 0.46 -1.2 1,759,610 + LRK53_RS07860 0.46 -0.6 1,759,610 + LRK53_RS07860 0.46 -1.4 1,759,610 + LRK53_RS07860 0.46 -1.5 1,759,610 + LRK53_RS07860 0.46 +1.5 1,759,610 + LRK53_RS07860 0.46 +1.1 1,759,611 - LRK53_RS07860 0.46 -0.4 1,759,611 - LRK53_RS07860 0.46 -0.8 1,759,611 - LRK53_RS07860 0.46 -0.8 1,759,611 - LRK53_RS07860 0.46 +0.4 1,759,611 - LRK53_RS07860 0.46 +0.2 1,759,611 - LRK53_RS07860 0.46 -0.3 1,759,632 - LRK53_RS07860 0.48 -0.7 1,759,671 + LRK53_RS07860 0.51 -0.6 1,759,671 + LRK53_RS07860 0.51 -0.7
Or see this region's nucleotide sequence