Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07720

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07710 and LRK53_RS07715 are separated by 457 nucleotidesLRK53_RS07715 and LRK53_RS07720 are separated by 220 nucleotidesLRK53_RS07720 and LRK53_RS07725 are separated by 30 nucleotides LRK53_RS07710: LRK53_RS07710 - hypothetical protein, at 1,721,453 to 1,721,755 _RS07710 LRK53_RS07715: LRK53_RS07715 - 30S ribosomal protein S20, at 1,722,213 to 1,722,476 _RS07715 LRK53_RS07720: LRK53_RS07720 - murein biosynthesis integral membrane protein MurJ, at 1,722,697 to 1,724,307 _RS07720 LRK53_RS07725: LRK53_RS07725 - bifunctional riboflavin kinase/FAD synthetase, at 1,724,338 to 1,725,291 _RS07725 Position (kb) 1722 1723 1724 1725Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1721.771 kb on + strandat 1721.804 kb on + strandat 1721.804 kb on + strandat 1721.839 kb on + strandat 1721.839 kb on + strandat 1721.839 kb on + strandat 1721.839 kb on + strandat 1721.839 kb on + strandat 1721.839 kb on + strandat 1721.840 kb on - strandat 1721.840 kb on - strandat 1721.840 kb on - strandat 1721.840 kb on - strandat 1721.843 kb on + strandat 1721.843 kb on + strandat 1721.843 kb on + strandat 1721.843 kb on + strandat 1721.843 kb on + strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.844 kb on - strandat 1721.868 kb on + strandat 1721.868 kb on + strandat 1721.868 kb on + strandat 1721.868 kb on + strandat 1721.869 kb on - strandat 1721.939 kb on + strandat 1721.939 kb on + strandat 1721.939 kb on + strandat 1721.940 kb on - strandat 1722.081 kb on + strandat 1722.081 kb on + strandat 1722.214 kb on + strandat 1722.214 kb on + strandat 1722.215 kb on - strandat 1722.215 kb on - strandat 1722.215 kb on - strandat 1722.215 kb on - strandat 1722.617 kb on - strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.683 kb on + strandat 1722.684 kb on - strandat 1722.684 kb on - strandat 1722.684 kb on - strandat 1724.326 kb on + strandat 1724.326 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.328 kb on + strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strandat 1724.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,721,771 + -0.6
1,721,804 + -0.7
1,721,804 + -0.9
1,721,839 + -0.9
1,721,839 + -2.6
1,721,839 + -0.6
1,721,839 + -2.2
1,721,839 + -0.9
1,721,839 + +1.7
1,721,840 - -1.8
1,721,840 - -1.9
1,721,840 - +3.1
1,721,840 - +2.2
1,721,843 + -0.8
1,721,843 + -0.1
1,721,843 + -0.3
1,721,843 + -1.3
1,721,843 + -0.9
1,721,844 - +1.1
1,721,844 - -2.8
1,721,844 - -0.5
1,721,844 - -1.1
1,721,844 - -0.6
1,721,844 - -2.4
1,721,844 - -0.0
1,721,868 + -1.8
1,721,868 + -0.9
1,721,868 + +1.7
1,721,868 + -0.7
1,721,869 - -1.4
1,721,939 + -2.2
1,721,939 + -0.7
1,721,939 + -1.8
1,721,940 - +1.1
1,722,081 + -2.2
1,722,081 + -0.6
1,722,214 + -1.7
1,722,214 + -2.2
1,722,215 - -1.7
1,722,215 - -2.0
1,722,215 - -1.0
1,722,215 - -0.6
1,722,617 - +1.6
1,722,683 + -0.4
1,722,683 + +1.1
1,722,683 + +1.5
1,722,683 + +0.3
1,722,683 + -1.3
1,722,683 + -0.3
1,722,683 + -1.0
1,722,683 + -1.6
1,722,684 - -2.4
1,722,684 - +0.5
1,722,684 - -0.7
1,724,326 + -0.6
1,724,326 + -0.8
1,724,328 + -0.8
1,724,328 + +0.2
1,724,328 + +1.1
1,724,328 + -2.4
1,724,328 + -0.5
1,724,328 + +0.9
1,724,328 + -1.2
1,724,328 + +0.2
1,724,328 + -0.9
1,724,329 - -0.3
1,724,329 - +0.6
1,724,329 - -1.4
1,724,329 - -0.3
1,724,329 - -0.2
1,724,329 - -1.5
1,724,329 - -0.6
1,724,329 - +0.3
1,724,329 - -1.0
1,724,329 - -2.4
1,724,329 - -0.5
1,724,329 - -1.1
1,724,329 - +1.3
1,724,329 - -1.8
1,724,329 - -0.7

Or see this region's nucleotide sequence