Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07710 and LRK53_RS07715 are separated by 457 nucleotides LRK53_RS07715 and LRK53_RS07720 are separated by 220 nucleotides LRK53_RS07720 and LRK53_RS07725 are separated by 30 nucleotides
LRK53_RS07710: LRK53_RS07710 - hypothetical protein, at 1,721,453 to 1,721,755
_RS07710
LRK53_RS07715: LRK53_RS07715 - 30S ribosomal protein S20, at 1,722,213 to 1,722,476
_RS07715
LRK53_RS07720: LRK53_RS07720 - murein biosynthesis integral membrane protein MurJ, at 1,722,697 to 1,724,307
_RS07720
LRK53_RS07725: LRK53_RS07725 - bifunctional riboflavin kinase/FAD synthetase, at 1,724,338 to 1,725,291
_RS07725
Position (kb)
1722
1723
1724
1725 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1721.771 kb on + strand at 1721.804 kb on + strand at 1721.804 kb on + strand at 1721.839 kb on + strand at 1721.839 kb on + strand at 1721.839 kb on + strand at 1721.839 kb on + strand at 1721.839 kb on + strand at 1721.839 kb on + strand at 1721.840 kb on - strand at 1721.840 kb on - strand at 1721.840 kb on - strand at 1721.840 kb on - strand at 1721.843 kb on + strand at 1721.843 kb on + strand at 1721.843 kb on + strand at 1721.843 kb on + strand at 1721.843 kb on + strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.844 kb on - strand at 1721.868 kb on + strand at 1721.868 kb on + strand at 1721.868 kb on + strand at 1721.868 kb on + strand at 1721.869 kb on - strand at 1721.939 kb on + strand at 1721.939 kb on + strand at 1721.939 kb on + strand at 1721.940 kb on - strand at 1722.081 kb on + strand at 1722.081 kb on + strand at 1722.214 kb on + strand at 1722.214 kb on + strand at 1722.215 kb on - strand at 1722.215 kb on - strand at 1722.215 kb on - strand at 1722.215 kb on - strand at 1722.617 kb on - strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.683 kb on + strand at 1722.684 kb on - strand at 1722.684 kb on - strand at 1722.684 kb on - strand at 1724.326 kb on + strand at 1724.326 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.328 kb on + strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand at 1724.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,721,771 + -0.6 1,721,804 + -0.7 1,721,804 + -0.9 1,721,839 + -0.9 1,721,839 + -2.6 1,721,839 + -0.6 1,721,839 + -2.2 1,721,839 + -0.9 1,721,839 + +1.7 1,721,840 - -1.8 1,721,840 - -1.9 1,721,840 - +3.1 1,721,840 - +2.2 1,721,843 + -0.8 1,721,843 + -0.1 1,721,843 + -0.3 1,721,843 + -1.3 1,721,843 + -0.9 1,721,844 - +1.1 1,721,844 - -2.8 1,721,844 - -0.5 1,721,844 - -1.1 1,721,844 - -0.6 1,721,844 - -2.4 1,721,844 - -0.0 1,721,868 + -1.8 1,721,868 + -0.9 1,721,868 + +1.7 1,721,868 + -0.7 1,721,869 - -1.4 1,721,939 + -2.2 1,721,939 + -0.7 1,721,939 + -1.8 1,721,940 - +1.1 1,722,081 + -2.2 1,722,081 + -0.6 1,722,214 + -1.7 1,722,214 + -2.2 1,722,215 - -1.7 1,722,215 - -2.0 1,722,215 - -1.0 1,722,215 - -0.6 1,722,617 - +1.6 1,722,683 + -0.4 1,722,683 + +1.1 1,722,683 + +1.5 1,722,683 + +0.3 1,722,683 + -1.3 1,722,683 + -0.3 1,722,683 + -1.0 1,722,683 + -1.6 1,722,684 - -2.4 1,722,684 - +0.5 1,722,684 - -0.7 1,724,326 + -0.6 1,724,326 + -0.8 1,724,328 + -0.8 1,724,328 + +0.2 1,724,328 + +1.1 1,724,328 + -2.4 1,724,328 + -0.5 1,724,328 + +0.9 1,724,328 + -1.2 1,724,328 + +0.2 1,724,328 + -0.9 1,724,329 - -0.3 1,724,329 - +0.6 1,724,329 - -1.4 1,724,329 - -0.3 1,724,329 - -0.2 1,724,329 - -1.5 1,724,329 - -0.6 1,724,329 - +0.3 1,724,329 - -1.0 1,724,329 - -2.4 1,724,329 - -0.5 1,724,329 - -1.1 1,724,329 - +1.3 1,724,329 - -1.8 1,724,329 - -0.7
Or see this region's nucleotide sequence