Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07005

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07000 and LRK53_RS07005 are separated by 22 nucleotidesLRK53_RS07005 and LRK53_RS07010 overlap by 4 nucleotidesLRK53_RS07010 and LRK53_RS07015 overlap by 1 nucleotides LRK53_RS07000: LRK53_RS07000 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,576,915 to 1,578,114 _RS07000 LRK53_RS07005: LRK53_RS07005 - EamA family transporter, at 1,578,137 to 1,578,544 _RS07005 LRK53_RS07010: LRK53_RS07010 - EamA family transporter, at 1,578,541 to 1,578,921 _RS07010 LRK53_RS07015: LRK53_RS07015 - alpha/beta fold hydrolase, at 1,578,921 to 1,579,757 _RS07015 Position (kb) 1578 1579Strain fitness (log2 ratio) -3 -2 -1 0 1at 1578.125 kb on + strandat 1578.125 kb on + strandat 1578.126 kb on - strandat 1578.126 kb on - strandat 1579.027 kb on + strand, within LRK53_RS07015at 1579.027 kb on + strand, within LRK53_RS07015

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,578,125 + -0.6
1,578,125 + -3.1
1,578,126 - -2.4
1,578,126 - -1.0
1,579,027 + LRK53_RS07015 0.13 -0.9
1,579,027 + LRK53_RS07015 0.13 -0.4

Or see this region's nucleotide sequence