Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06430 and LRK53_RS06435 are separated by 18 nucleotides LRK53_RS06435 and LRK53_RS06440 are separated by 219 nucleotides LRK53_RS06440 and LRK53_RS06445 are separated by 11 nucleotides LRK53_RS06445 and LRK53_RS06450 are separated by 97 nucleotides LRK53_RS06450 and LRK53_RS06455 are separated by 96 nucleotides
LRK53_RS06430: LRK53_RS06430 - 50S ribosomal protein L5, at 1,464,057 to 1,464,599
_RS06430
LRK53_RS06435: LRK53_RS06435 - 30S ribosomal protein S14, at 1,464,618 to 1,464,923
_RS06435
LRK53_RS06440: LRK53_RS06440 - 30S ribosomal protein S8, at 1,465,143 to 1,465,538
_RS06440
LRK53_RS06445: LRK53_RS06445 - 50S ribosomal protein L6, at 1,465,550 to 1,466,077
_RS06445
LRK53_RS06450: LRK53_RS06450 - 50S ribosomal protein L18, at 1,466,175 to 1,466,534
_RS06450
LRK53_RS06455: LRK53_RS06455 - 30S ribosomal protein S5, at 1,466,631 to 1,467,152
_RS06455
Position (kb)
1465
1466
1467 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1465.014 kb on + strand at 1465.014 kb on + strand at 1466.075 kb on + strand at 1466.075 kb on + strand at 1466.075 kb on + strand at 1466.075 kb on + strand at 1466.075 kb on + strand at 1466.145 kb on + strand at 1466.145 kb on + strand at 1466.145 kb on + strand at 1466.145 kb on + strand at 1466.581 kb on + strand at 1466.581 kb on + strand at 1466.581 kb on + strand at 1466.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,465,014 + -1.3 1,465,014 + -1.8 1,466,075 + -1.9 1,466,075 + +0.9 1,466,075 + -1.8 1,466,075 + -1.6 1,466,075 + -2.6 1,466,145 + +0.3 1,466,145 + -1.4 1,466,145 + -2.4 1,466,145 + -0.2 1,466,581 + -1.3 1,466,581 + +0.1 1,466,581 + +2.1 1,466,581 + -1.1
Or see this region's nucleotide sequence