Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06445

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06430 and LRK53_RS06435 are separated by 18 nucleotidesLRK53_RS06435 and LRK53_RS06440 are separated by 219 nucleotidesLRK53_RS06440 and LRK53_RS06445 are separated by 11 nucleotidesLRK53_RS06445 and LRK53_RS06450 are separated by 97 nucleotidesLRK53_RS06450 and LRK53_RS06455 are separated by 96 nucleotides LRK53_RS06430: LRK53_RS06430 - 50S ribosomal protein L5, at 1,464,057 to 1,464,599 _RS06430 LRK53_RS06435: LRK53_RS06435 - 30S ribosomal protein S14, at 1,464,618 to 1,464,923 _RS06435 LRK53_RS06440: LRK53_RS06440 - 30S ribosomal protein S8, at 1,465,143 to 1,465,538 _RS06440 LRK53_RS06445: LRK53_RS06445 - 50S ribosomal protein L6, at 1,465,550 to 1,466,077 _RS06445 LRK53_RS06450: LRK53_RS06450 - 50S ribosomal protein L18, at 1,466,175 to 1,466,534 _RS06450 LRK53_RS06455: LRK53_RS06455 - 30S ribosomal protein S5, at 1,466,631 to 1,467,152 _RS06455 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -2 -1 0 1 2at 1465.014 kb on + strandat 1465.014 kb on + strandat 1466.075 kb on + strandat 1466.075 kb on + strandat 1466.075 kb on + strandat 1466.075 kb on + strandat 1466.075 kb on + strandat 1466.145 kb on + strandat 1466.145 kb on + strandat 1466.145 kb on + strandat 1466.145 kb on + strandat 1466.581 kb on + strandat 1466.581 kb on + strandat 1466.581 kb on + strandat 1466.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,465,014 + -1.3
1,465,014 + -1.8
1,466,075 + -1.9
1,466,075 + +0.9
1,466,075 + -1.8
1,466,075 + -1.6
1,466,075 + -2.6
1,466,145 + +0.3
1,466,145 + -1.4
1,466,145 + -2.4
1,466,145 + -0.2
1,466,581 + -1.3
1,466,581 + +0.1
1,466,581 + +2.1
1,466,581 + -1.1

Or see this region's nucleotide sequence