Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06355 and LRK53_RS06360 are separated by 121 nucleotides LRK53_RS06360 and LRK53_RS06365 are separated by 520 nucleotides LRK53_RS06365 and LRK53_RS06370 are separated by 20 nucleotides
LRK53_RS06355: LRK53_RS06355 - elongation factor G, at 1,454,378 to 1,456,507
_RS06355
LRK53_RS06360: LRK53_RS06360 - elongation factor Tu, at 1,456,629 to 1,457,819
_RS06360
LRK53_RS06365: LRK53_RS06365 - 30S ribosomal protein S10, at 1,458,340 to 1,458,651
_RS06365
LRK53_RS06370: LRK53_RS06370 - 50S ribosomal protein L3, at 1,458,672 to 1,459,313
_RS06370
Position (kb)
1456
1457
1458 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.817 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.820 kb on + strand at 1457.886 kb on + strand at 1457.886 kb on + strand at 1457.886 kb on + strand at 1457.886 kb on + strand at 1457.886 kb on + strand at 1457.886 kb on + strand at 1457.887 kb on - strand at 1457.887 kb on - strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.912 kb on + strand at 1457.913 kb on - strand at 1457.913 kb on - strand at 1457.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,457,817 + -1.3 1,457,817 + -0.9 1,457,817 + +1.4 1,457,817 + -2.4 1,457,817 + -0.5 1,457,817 + -2.3 1,457,817 + -1.3 1,457,820 + -2.6 1,457,820 + -0.2 1,457,820 + -1.7 1,457,820 + -2.1 1,457,820 + -3.0 1,457,820 + +1.5 1,457,820 + -0.1 1,457,820 + -2.9 1,457,820 + -0.4 1,457,820 + -1.4 1,457,820 + +0.3 1,457,820 + +0.1 1,457,820 + -2.7 1,457,886 + +1.0 1,457,886 + -2.5 1,457,886 + +1.2 1,457,886 + -1.0 1,457,886 + +0.1 1,457,886 + -0.2 1,457,887 - -0.3 1,457,887 - -2.4 1,457,912 + -0.6 1,457,912 + -0.8 1,457,912 + -2.1 1,457,912 + -0.1 1,457,912 + -2.0 1,457,912 + -1.7 1,457,912 + +0.6 1,457,912 + -1.9 1,457,912 + -0.1 1,457,912 + -1.4 1,457,912 + -0.7 1,457,912 + -2.6 1,457,912 + -2.1 1,457,913 - -2.0 1,457,913 - +1.3 1,457,913 - -0.6
Or see this region's nucleotide sequence