Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06360

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06355 and LRK53_RS06360 are separated by 121 nucleotidesLRK53_RS06360 and LRK53_RS06365 are separated by 520 nucleotidesLRK53_RS06365 and LRK53_RS06370 are separated by 20 nucleotides LRK53_RS06355: LRK53_RS06355 - elongation factor G, at 1,454,378 to 1,456,507 _RS06355 LRK53_RS06360: LRK53_RS06360 - elongation factor Tu, at 1,456,629 to 1,457,819 _RS06360 LRK53_RS06365: LRK53_RS06365 - 30S ribosomal protein S10, at 1,458,340 to 1,458,651 _RS06365 LRK53_RS06370: LRK53_RS06370 - 50S ribosomal protein L3, at 1,458,672 to 1,459,313 _RS06370 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -3 -2 -1 0 1at 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.817 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.820 kb on + strandat 1457.886 kb on + strandat 1457.886 kb on + strandat 1457.886 kb on + strandat 1457.886 kb on + strandat 1457.886 kb on + strandat 1457.886 kb on + strandat 1457.887 kb on - strandat 1457.887 kb on - strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.912 kb on + strandat 1457.913 kb on - strandat 1457.913 kb on - strandat 1457.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,457,817 + -1.3
1,457,817 + -0.9
1,457,817 + +1.4
1,457,817 + -2.4
1,457,817 + -0.5
1,457,817 + -2.3
1,457,817 + -1.3
1,457,820 + -2.6
1,457,820 + -0.2
1,457,820 + -1.7
1,457,820 + -2.1
1,457,820 + -3.0
1,457,820 + +1.5
1,457,820 + -0.1
1,457,820 + -2.9
1,457,820 + -0.4
1,457,820 + -1.4
1,457,820 + +0.3
1,457,820 + +0.1
1,457,820 + -2.7
1,457,886 + +1.0
1,457,886 + -2.5
1,457,886 + +1.2
1,457,886 + -1.0
1,457,886 + +0.1
1,457,886 + -0.2
1,457,887 - -0.3
1,457,887 - -2.4
1,457,912 + -0.6
1,457,912 + -0.8
1,457,912 + -2.1
1,457,912 + -0.1
1,457,912 + -2.0
1,457,912 + -1.7
1,457,912 + +0.6
1,457,912 + -1.9
1,457,912 + -0.1
1,457,912 + -1.4
1,457,912 + -0.7
1,457,912 + -2.6
1,457,912 + -2.1
1,457,913 - -2.0
1,457,913 - +1.3
1,457,913 - -0.6

Or see this region's nucleotide sequence