Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06345

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06340 and LRK53_RS06345 are separated by 177 nucleotidesLRK53_RS06345 and LRK53_RS06350 are separated by 69 nucleotidesLRK53_RS06350 and LRK53_RS06355 are separated by 183 nucleotides LRK53_RS06340: LRK53_RS06340 - DNA-directed RNA polymerase subunit beta', at 1,448,891 to 1,453,105 _RS06340 LRK53_RS06345: LRK53_RS06345 - 30S ribosomal protein S12, at 1,453,283 to 1,453,657 _RS06345 LRK53_RS06350: LRK53_RS06350 - 30S ribosomal protein S7, at 1,453,727 to 1,454,194 _RS06350 LRK53_RS06355: LRK53_RS06355 - elongation factor G, at 1,454,378 to 1,456,507 _RS06355 Position (kb) 1453 1454Strain fitness (log2 ratio) -1 0 1at 1452.983 kb on + strandat 1453.103 kb on + strandat 1453.111 kb on + strandat 1453.111 kb on + strandat 1453.133 kb on + strandat 1453.133 kb on + strandat 1453.133 kb on + strandat 1453.133 kb on + strandat 1453.133 kb on + strandat 1453.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,452,983 + +1.5
1,453,103 + +0.1
1,453,111 + -0.4
1,453,111 + -1.0
1,453,133 + +1.6
1,453,133 + +0.9
1,453,133 + +1.3
1,453,133 + -0.8
1,453,133 + -0.7
1,453,133 + -1.6

Or see this region's nucleotide sequence