Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06220

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06215 and LRK53_RS06220 are separated by 89 nucleotidesLRK53_RS06220 and LRK53_RS06225 are separated by 84 nucleotides LRK53_RS06215: LRK53_RS06215 - peptide chain release factor 1, at 1,424,601 to 1,425,680 _RS06215 LRK53_RS06220: LRK53_RS06220 - glutamyl-tRNA reductase, at 1,425,770 to 1,427,038 _RS06220 LRK53_RS06225: LRK53_RS06225 - tetratricopeptide repeat protein, at 1,427,123 to 1,428,880 _RS06225 Position (kb) 1425 1426 1427 1428Strain fitness (log2 ratio) -2 -1 0 1 2at 1425.701 kb on - strandat 1425.701 kb on - strandat 1425.701 kb on - strandat 1425.701 kb on - strandat 1425.701 kb on - strandat 1425.701 kb on - strandat 1425.726 kb on + strandat 1425.727 kb on - strandat 1425.727 kb on - strandat 1425.727 kb on - strandat 1425.727 kb on - strandat 1425.771 kb on + strandat 1425.771 kb on + strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.078 kb on - strandat 1427.078 kb on - strandat 1427.078 kb on - strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.082 kb on + strandat 1427.083 kb on - strandat 1427.083 kb on - strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.113 kb on + strandat 1427.137 kb on + strandat 1427.182 kb on + strandat 1427.182 kb on + strandat 1427.182 kb on + strandat 1427.182 kb on + strandat 1427.221 kb on + strandat 1427.384 kb on + strand, within LRK53_RS06225at 1427.384 kb on + strand, within LRK53_RS06225at 1427.384 kb on + strand, within LRK53_RS06225at 1427.774 kb on + strand, within LRK53_RS06225at 1427.828 kb on + strand, within LRK53_RS06225at 1427.828 kb on + strand, within LRK53_RS06225at 1427.828 kb on + strand, within LRK53_RS06225at 1427.828 kb on + strand, within LRK53_RS06225at 1427.828 kb on + strand, within LRK53_RS06225at 1427.929 kb on - strand, within LRK53_RS06225at 1427.939 kb on + strand, within LRK53_RS06225at 1427.939 kb on + strand, within LRK53_RS06225

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,425,701 - -1.7
1,425,701 - +0.3
1,425,701 - -1.0
1,425,701 - -1.1
1,425,701 - -0.8
1,425,701 - -0.0
1,425,726 + -0.9
1,425,727 - -0.4
1,425,727 - +0.2
1,425,727 - -1.5
1,425,727 - -0.8
1,425,771 + +0.3
1,425,771 + +0.6
1,427,077 + +0.3
1,427,077 + +0.6
1,427,077 + +1.1
1,427,077 + -0.6
1,427,077 + -0.8
1,427,077 + +1.3
1,427,078 - +0.5
1,427,078 - -1.9
1,427,078 - -2.0
1,427,082 + -1.6
1,427,082 + -1.6
1,427,082 + +1.1
1,427,082 + +1.2
1,427,082 + +0.7
1,427,082 + +1.2
1,427,082 + +0.2
1,427,083 - -0.4
1,427,083 - -1.3
1,427,113 + +0.9
1,427,113 + -1.3
1,427,113 + -0.0
1,427,113 + -0.5
1,427,113 + +1.2
1,427,113 + +0.4
1,427,113 + +0.9
1,427,113 + -0.3
1,427,137 + +1.8
1,427,182 + +1.7
1,427,182 + -2.1
1,427,182 + +1.9
1,427,182 + +1.5
1,427,221 + -0.1
1,427,384 + LRK53_RS06225 0.15 -1.4
1,427,384 + LRK53_RS06225 0.15 -0.5
1,427,384 + LRK53_RS06225 0.15 +0.8
1,427,774 + LRK53_RS06225 0.37 -0.9
1,427,828 + LRK53_RS06225 0.40 -0.9
1,427,828 + LRK53_RS06225 0.40 -2.4
1,427,828 + LRK53_RS06225 0.40 +1.4
1,427,828 + LRK53_RS06225 0.40 +0.4
1,427,828 + LRK53_RS06225 0.40 -0.6
1,427,929 - LRK53_RS06225 0.46 +2.3
1,427,939 + LRK53_RS06225 0.46 +0.4
1,427,939 + LRK53_RS06225 0.46 -0.6

Or see this region's nucleotide sequence