Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06215 and LRK53_RS06220 are separated by 89 nucleotides LRK53_RS06220 and LRK53_RS06225 are separated by 84 nucleotides
LRK53_RS06215: LRK53_RS06215 - peptide chain release factor 1, at 1,424,601 to 1,425,680
_RS06215
LRK53_RS06220: LRK53_RS06220 - glutamyl-tRNA reductase, at 1,425,770 to 1,427,038
_RS06220
LRK53_RS06225: LRK53_RS06225 - tetratricopeptide repeat protein, at 1,427,123 to 1,428,880
_RS06225
Position (kb)
1425
1426
1427
1428 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1425.701 kb on - strand at 1425.701 kb on - strand at 1425.701 kb on - strand at 1425.701 kb on - strand at 1425.701 kb on - strand at 1425.701 kb on - strand at 1425.726 kb on + strand at 1425.727 kb on - strand at 1425.727 kb on - strand at 1425.727 kb on - strand at 1425.727 kb on - strand at 1425.771 kb on + strand at 1425.771 kb on + strand at 1427.077 kb on + strand at 1427.077 kb on + strand at 1427.077 kb on + strand at 1427.077 kb on + strand at 1427.077 kb on + strand at 1427.077 kb on + strand at 1427.078 kb on - strand at 1427.078 kb on - strand at 1427.078 kb on - strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.082 kb on + strand at 1427.083 kb on - strand at 1427.083 kb on - strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.113 kb on + strand at 1427.137 kb on + strand at 1427.182 kb on + strand at 1427.182 kb on + strand at 1427.182 kb on + strand at 1427.182 kb on + strand at 1427.221 kb on + strand at 1427.384 kb on + strand, within LRK53_RS06225 at 1427.384 kb on + strand, within LRK53_RS06225 at 1427.384 kb on + strand, within LRK53_RS06225 at 1427.774 kb on + strand, within LRK53_RS06225 at 1427.828 kb on + strand, within LRK53_RS06225 at 1427.828 kb on + strand, within LRK53_RS06225 at 1427.828 kb on + strand, within LRK53_RS06225 at 1427.828 kb on + strand, within LRK53_RS06225 at 1427.828 kb on + strand, within LRK53_RS06225 at 1427.929 kb on - strand, within LRK53_RS06225 at 1427.939 kb on + strand, within LRK53_RS06225 at 1427.939 kb on + strand, within LRK53_RS06225
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,425,701 - -1.7 1,425,701 - +0.3 1,425,701 - -1.0 1,425,701 - -1.1 1,425,701 - -0.8 1,425,701 - -0.0 1,425,726 + -0.9 1,425,727 - -0.4 1,425,727 - +0.2 1,425,727 - -1.5 1,425,727 - -0.8 1,425,771 + +0.3 1,425,771 + +0.6 1,427,077 + +0.3 1,427,077 + +0.6 1,427,077 + +1.1 1,427,077 + -0.6 1,427,077 + -0.8 1,427,077 + +1.3 1,427,078 - +0.5 1,427,078 - -1.9 1,427,078 - -2.0 1,427,082 + -1.6 1,427,082 + -1.6 1,427,082 + +1.1 1,427,082 + +1.2 1,427,082 + +0.7 1,427,082 + +1.2 1,427,082 + +0.2 1,427,083 - -0.4 1,427,083 - -1.3 1,427,113 + +0.9 1,427,113 + -1.3 1,427,113 + -0.0 1,427,113 + -0.5 1,427,113 + +1.2 1,427,113 + +0.4 1,427,113 + +0.9 1,427,113 + -0.3 1,427,137 + +1.8 1,427,182 + +1.7 1,427,182 + -2.1 1,427,182 + +1.9 1,427,182 + +1.5 1,427,221 + -0.1 1,427,384 + LRK53_RS06225 0.15 -1.4 1,427,384 + LRK53_RS06225 0.15 -0.5 1,427,384 + LRK53_RS06225 0.15 +0.8 1,427,774 + LRK53_RS06225 0.37 -0.9 1,427,828 + LRK53_RS06225 0.40 -0.9 1,427,828 + LRK53_RS06225 0.40 -2.4 1,427,828 + LRK53_RS06225 0.40 +1.4 1,427,828 + LRK53_RS06225 0.40 +0.4 1,427,828 + LRK53_RS06225 0.40 -0.6 1,427,929 - LRK53_RS06225 0.46 +2.3 1,427,939 + LRK53_RS06225 0.46 +0.4 1,427,939 + LRK53_RS06225 0.46 -0.6
Or see this region's nucleotide sequence