Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05910 and LRK53_RS05915 overlap by 1 nucleotides LRK53_RS05915 and LRK53_RS05920 are separated by 76 nucleotides LRK53_RS05920 and LRK53_RS05925 overlap by 4 nucleotides LRK53_RS05925 and LRK53_RS05930 are separated by 124 nucleotides
LRK53_RS05910: LRK53_RS05910 - dihydrofolate reductase, at 1,367,884 to 1,368,372
_RS05910
LRK53_RS05915: LRK53_RS05915 - NUDIX domain-containing protein, at 1,368,372 to 1,368,800
_RS05915
LRK53_RS05920: LRK53_RS05920 - dephospho-CoA kinase, at 1,368,877 to 1,369,497
_RS05920
LRK53_RS05925: LRK53_RS05925 - A24 family peptidase, at 1,369,494 to 1,370,351
_RS05925
LRK53_RS05930: LRK53_RS05930 - endonuclease domain-containing protein, at 1,370,476 to 1,370,754
_RS05930
Position (kb) 1368
1369
1370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1368.613 kb on - strand, within LRK53_RS05915 at 1368.802 kb on + strand at 1368.802 kb on + strand at 1368.802 kb on + strand at 1368.802 kb on + strand at 1368.803 kb on - strand at 1368.803 kb on - strand at 1368.803 kb on - strand at 1368.803 kb on - strand at 1368.803 kb on - strand at 1368.803 kb on - strand at 1368.852 kb on - strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.778 kb on - strand, within LRK53_RS05925 at 1369.798 kb on + strand, within LRK53_RS05925 at 1370.071 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.307 kb on + strand at 1370.308 kb on - strand at 1370.403 kb on + strand at 1370.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,368,613 - LRK53_RS05915 0.56 -0.1 1,368,802 + -0.4 1,368,802 + +0.3 1,368,802 + -1.9 1,368,802 + +0.6 1,368,803 - +0.1 1,368,803 - -0.9 1,368,803 - -1.0 1,368,803 - +0.2 1,368,803 - -0.3 1,368,803 - -2.2 1,368,852 - -0.6 1,369,519 + -0.9 1,369,519 + -0.3 1,369,519 + +2.4 1,369,519 + +0.9 1,369,519 + -0.1 1,369,519 + -1.7 1,369,519 + -1.1 1,369,519 + -1.7 1,369,519 + +0.1 1,369,519 + -0.2 1,369,519 + -0.2 1,369,520 - -2.4 1,369,520 - +0.2 1,369,520 - -0.3 1,369,520 - +2.2 1,369,520 - +0.4 1,369,520 - -1.0 1,369,520 - -0.9 1,369,777 + LRK53_RS05925 0.33 -0.0 1,369,777 + LRK53_RS05925 0.33 -0.1 1,369,777 + LRK53_RS05925 0.33 -2.3 1,369,778 - LRK53_RS05925 0.33 +0.6 1,369,798 + LRK53_RS05925 0.35 +0.9 1,370,071 + LRK53_RS05925 0.67 +0.3 1,370,112 + LRK53_RS05925 0.72 +0.3 1,370,112 + LRK53_RS05925 0.72 -0.9 1,370,112 + LRK53_RS05925 0.72 +1.8 1,370,112 + LRK53_RS05925 0.72 +1.9 1,370,112 + LRK53_RS05925 0.72 -0.7 1,370,112 + LRK53_RS05925 0.72 -0.4 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -1.8 1,370,112 + LRK53_RS05925 0.72 -1.1 1,370,112 + LRK53_RS05925 0.72 -0.2 1,370,112 + LRK53_RS05925 0.72 -0.0 1,370,112 + LRK53_RS05925 0.72 +0.8 1,370,112 + LRK53_RS05925 0.72 +0.7 1,370,112 + LRK53_RS05925 0.72 +0.8 1,370,112 + LRK53_RS05925 0.72 +0.8 1,370,112 + LRK53_RS05925 0.72 +0.9 1,370,112 + LRK53_RS05925 0.72 +0.2 1,370,112 + LRK53_RS05925 0.72 -0.8 1,370,112 + LRK53_RS05925 0.72 -0.0 1,370,112 + LRK53_RS05925 0.72 +1.9 1,370,112 + LRK53_RS05925 0.72 +1.0 1,370,112 + LRK53_RS05925 0.72 -0.1 1,370,112 + LRK53_RS05925 0.72 +0.9 1,370,113 - LRK53_RS05925 0.72 -0.4 1,370,113 - LRK53_RS05925 0.72 +0.3 1,370,113 - LRK53_RS05925 0.72 -0.3 1,370,113 - LRK53_RS05925 0.72 -1.8 1,370,113 - LRK53_RS05925 0.72 +0.2 1,370,113 - LRK53_RS05925 0.72 +1.4 1,370,113 - LRK53_RS05925 0.72 +0.1 1,370,113 - LRK53_RS05925 0.72 +2.6 1,370,113 - LRK53_RS05925 0.72 +0.2 1,370,113 - LRK53_RS05925 0.72 +2.1 1,370,113 - LRK53_RS05925 0.72 +1.9 1,370,113 - LRK53_RS05925 0.72 -1.9 1,370,113 - LRK53_RS05925 0.72 -0.1 1,370,113 - LRK53_RS05925 0.72 -1.3 1,370,307 + +0.5 1,370,308 - +0.3 1,370,403 + -2.1 1,370,404 - -0.5
Or see this region's nucleotide sequence