Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05820 and LRK53_RS05825 are separated by 163 nucleotides LRK53_RS05825 and LRK53_RS05830 overlap by 2 nucleotides LRK53_RS05830 and LRK53_RS05835 are separated by 99 nucleotides
LRK53_RS05820: LRK53_RS05820 - FtsX-like permease family protein, at 1,349,876 to 1,352,359
_RS05820
LRK53_RS05825: LRK53_RS05825 - ATP-binding cassette domain-containing protein, at 1,352,523 to 1,353,221
_RS05825
LRK53_RS05830: LRK53_RS05830 - arylesterase, at 1,353,220 to 1,353,831
_RS05830
LRK53_RS05835: LRK53_RS05835 - response regulator transcription factor, at 1,353,931 to 1,354,662
_RS05835
Position (kb) 1352
1353
1354 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1351.530 kb on + strand, within LRK53_RS05820 at 1351.739 kb on + strand, within LRK53_RS05820 at 1351.739 kb on + strand, within LRK53_RS05820 at 1351.739 kb on + strand, within LRK53_RS05820 at 1351.740 kb on - strand, within LRK53_RS05820 at 1351.740 kb on - strand, within LRK53_RS05820 at 1351.740 kb on - strand, within LRK53_RS05820 at 1351.740 kb on - strand, within LRK53_RS05820 at 1351.947 kb on + strand, within LRK53_RS05820 at 1351.947 kb on + strand, within LRK53_RS05820 at 1351.947 kb on + strand, within LRK53_RS05820 at 1351.947 kb on + strand, within LRK53_RS05820 at 1351.947 kb on + strand, within LRK53_RS05820 at 1351.948 kb on - strand, within LRK53_RS05820 at 1351.948 kb on - strand, within LRK53_RS05820 at 1351.948 kb on - strand, within LRK53_RS05820 at 1352.028 kb on + strand, within LRK53_RS05820 at 1352.028 kb on + strand, within LRK53_RS05820 at 1352.405 kb on + strand at 1352.405 kb on + strand at 1352.405 kb on + strand at 1353.179 kb on + strand at 1353.179 kb on + strand at 1353.179 kb on + strand at 1353.180 kb on - strand at 1353.180 kb on - strand at 1353.180 kb on - strand at 1353.180 kb on - strand at 1353.366 kb on + strand, within LRK53_RS05830 at 1353.367 kb on - strand, within LRK53_RS05830 at 1353.367 kb on - strand, within LRK53_RS05830 at 1353.473 kb on - strand, within LRK53_RS05830 at 1353.473 kb on - strand, within LRK53_RS05830 at 1353.628 kb on + strand, within LRK53_RS05830 at 1353.628 kb on + strand, within LRK53_RS05830 at 1353.629 kb on - strand, within LRK53_RS05830 at 1353.629 kb on - strand, within LRK53_RS05830 at 1353.664 kb on + strand, within LRK53_RS05830 at 1353.664 kb on + strand, within LRK53_RS05830 at 1353.664 kb on + strand, within LRK53_RS05830 at 1353.664 kb on + strand, within LRK53_RS05830 at 1353.800 kb on + strand at 1353.800 kb on + strand at 1353.800 kb on + strand at 1353.801 kb on - strand at 1353.801 kb on - strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.905 kb on + strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.906 kb on - strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.923 kb on + strand at 1353.924 kb on - strand at 1353.924 kb on - strand at 1353.924 kb on - strand at 1353.924 kb on - strand at 1353.924 kb on - strand at 1353.924 kb on - strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.938 kb on + strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1353.939 kb on - strand at 1354.027 kb on + strand, within LRK53_RS05835 at 1354.039 kb on + strand, within LRK53_RS05835 at 1354.039 kb on + strand, within LRK53_RS05835 at 1354.040 kb on - strand, within LRK53_RS05835 at 1354.040 kb on - strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.087 kb on + strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835 at 1354.088 kb on - strand, within LRK53_RS05835
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,351,530 + LRK53_RS05820 0.67 -0.9 1,351,739 + LRK53_RS05820 0.75 -0.4 1,351,739 + LRK53_RS05820 0.75 -2.8 1,351,739 + LRK53_RS05820 0.75 -0.9 1,351,740 - LRK53_RS05820 0.75 +0.7 1,351,740 - LRK53_RS05820 0.75 +0.6 1,351,740 - LRK53_RS05820 0.75 -0.7 1,351,740 - LRK53_RS05820 0.75 -1.1 1,351,947 + LRK53_RS05820 0.83 +1.1 1,351,947 + LRK53_RS05820 0.83 -1.1 1,351,947 + LRK53_RS05820 0.83 -1.2 1,351,947 + LRK53_RS05820 0.83 +0.7 1,351,947 + LRK53_RS05820 0.83 -2.7 1,351,948 - LRK53_RS05820 0.83 -0.1 1,351,948 - LRK53_RS05820 0.83 -0.8 1,351,948 - LRK53_RS05820 0.83 +0.4 1,352,028 + LRK53_RS05820 0.87 -1.6 1,352,028 + LRK53_RS05820 0.87 -2.0 1,352,405 + -0.9 1,352,405 + -1.8 1,352,405 + +0.1 1,353,179 + -0.6 1,353,179 + -0.9 1,353,179 + -2.5 1,353,180 - -0.6 1,353,180 - -1.6 1,353,180 - -0.1 1,353,180 - +0.3 1,353,366 + LRK53_RS05830 0.24 -1.0 1,353,367 - LRK53_RS05830 0.24 +1.0 1,353,367 - LRK53_RS05830 0.24 +0.0 1,353,473 - LRK53_RS05830 0.41 -0.8 1,353,473 - LRK53_RS05830 0.41 +0.4 1,353,628 + LRK53_RS05830 0.67 -1.6 1,353,628 + LRK53_RS05830 0.67 -0.7 1,353,629 - LRK53_RS05830 0.67 +0.3 1,353,629 - LRK53_RS05830 0.67 -2.9 1,353,664 + LRK53_RS05830 0.73 -0.8 1,353,664 + LRK53_RS05830 0.73 -1.1 1,353,664 + LRK53_RS05830 0.73 -0.9 1,353,664 + LRK53_RS05830 0.73 -1.9 1,353,800 + +1.2 1,353,800 + -1.5 1,353,800 + -0.8 1,353,801 - -0.3 1,353,801 - -0.7 1,353,905 + -0.6 1,353,905 + -2.0 1,353,905 + -0.1 1,353,905 + -0.3 1,353,905 + +0.0 1,353,905 + -1.8 1,353,905 + +1.5 1,353,905 + -0.1 1,353,905 + +0.5 1,353,906 - -1.2 1,353,906 - -0.8 1,353,906 - -1.5 1,353,906 - -0.8 1,353,906 - -0.1 1,353,906 - +0.3 1,353,906 - -0.4 1,353,923 + -1.6 1,353,923 + -1.4 1,353,923 + -0.7 1,353,923 + +0.2 1,353,923 + -1.0 1,353,923 + -1.3 1,353,923 + -0.7 1,353,923 + -2.8 1,353,923 + +1.0 1,353,923 + -0.8 1,353,923 + -2.8 1,353,923 + -0.7 1,353,923 + -1.3 1,353,923 + -2.7 1,353,923 + +0.1 1,353,923 + +0.2 1,353,923 + +1.9 1,353,924 - -0.3 1,353,924 - -2.5 1,353,924 - -0.4 1,353,924 - -2.2 1,353,924 - -1.6 1,353,924 - -1.4 1,353,938 + -1.0 1,353,938 + -0.0 1,353,938 + -0.1 1,353,938 + -1.8 1,353,938 + +0.1 1,353,938 + -1.4 1,353,938 + +0.1 1,353,938 + -0.8 1,353,938 + -2.0 1,353,938 + -1.1 1,353,938 + -1.2 1,353,938 + -0.9 1,353,938 + -1.2 1,353,938 + -0.6 1,353,938 + -2.8 1,353,938 + -0.9 1,353,938 + -0.7 1,353,938 + +0.4 1,353,938 + +0.3 1,353,938 + -0.4 1,353,938 + -0.1 1,353,938 + -1.2 1,353,938 + -1.0 1,353,938 + -1.5 1,353,938 + -0.8 1,353,938 + +1.3 1,353,938 + -0.3 1,353,938 + -1.2 1,353,938 + +0.7 1,353,938 + +2.1 1,353,938 + +0.7 1,353,938 + +0.2 1,353,938 + +1.7 1,353,938 + -1.4 1,353,938 + -0.4 1,353,938 + -2.2 1,353,938 + -1.8 1,353,938 + -2.4 1,353,938 + -0.9 1,353,939 - -0.1 1,353,939 - -0.6 1,353,939 - -0.6 1,353,939 - +1.2 1,353,939 - -2.0 1,353,939 - -1.1 1,353,939 - -0.1 1,353,939 - -0.0 1,353,939 - -0.0 1,353,939 - +0.3 1,353,939 - -1.5 1,353,939 - -1.7 1,353,939 - -4.0 1,353,939 - -1.5 1,353,939 - -1.1 1,353,939 - +0.1 1,353,939 - -1.8 1,353,939 - -2.4 1,353,939 - -0.4 1,353,939 - -0.9 1,353,939 - -2.5 1,353,939 - +0.7 1,353,939 - -1.1 1,353,939 - -0.3 1,353,939 - +0.7 1,353,939 - -0.9 1,353,939 - +0.1 1,353,939 - -1.6 1,353,939 - -1.9 1,353,939 - -1.1 1,353,939 - -1.0 1,353,939 - -0.6 1,353,939 - -1.5 1,353,939 - -2.2 1,353,939 - -0.8 1,354,027 + LRK53_RS05835 0.13 +0.1 1,354,039 + LRK53_RS05835 0.15 -0.8 1,354,039 + LRK53_RS05835 0.15 -0.4 1,354,040 - LRK53_RS05835 0.15 -1.3 1,354,040 - LRK53_RS05835 0.15 -4.3 1,354,087 + LRK53_RS05835 0.21 -0.7 1,354,087 + LRK53_RS05835 0.21 -0.6 1,354,087 + LRK53_RS05835 0.21 +1.5 1,354,087 + LRK53_RS05835 0.21 -1.5 1,354,087 + LRK53_RS05835 0.21 -0.6 1,354,087 + LRK53_RS05835 0.21 +0.0 1,354,087 + LRK53_RS05835 0.21 -1.0 1,354,087 + LRK53_RS05835 0.21 -2.5 1,354,087 + LRK53_RS05835 0.21 -0.6 1,354,087 + LRK53_RS05835 0.21 -0.8 1,354,087 + LRK53_RS05835 0.21 -0.1 1,354,087 + LRK53_RS05835 0.21 -0.3 1,354,087 + LRK53_RS05835 0.21 -0.6 1,354,087 + LRK53_RS05835 0.21 -1.8 1,354,087 + LRK53_RS05835 0.21 -1.2 1,354,087 + LRK53_RS05835 0.21 -0.5 1,354,087 + LRK53_RS05835 0.21 +1.9 1,354,087 + LRK53_RS05835 0.21 -2.0 1,354,087 + LRK53_RS05835 0.21 -0.1 1,354,087 + LRK53_RS05835 0.21 -0.1 1,354,087 + LRK53_RS05835 0.21 -1.9 1,354,087 + LRK53_RS05835 0.21 +1.0 1,354,087 + LRK53_RS05835 0.21 +0.1 1,354,087 + LRK53_RS05835 0.21 -1.7 1,354,087 + LRK53_RS05835 0.21 -0.6 1,354,087 + LRK53_RS05835 0.21 -0.3 1,354,088 - LRK53_RS05835 0.21 -1.0 1,354,088 - LRK53_RS05835 0.21 -2.3 1,354,088 - LRK53_RS05835 0.21 -0.6 1,354,088 - LRK53_RS05835 0.21 -0.8 1,354,088 - LRK53_RS05835 0.21 -1.1 1,354,088 - LRK53_RS05835 0.21 -0.9 1,354,088 - LRK53_RS05835 0.21 +1.0 1,354,088 - LRK53_RS05835 0.21 -0.4 1,354,088 - LRK53_RS05835 0.21 -1.3 1,354,088 - LRK53_RS05835 0.21 -1.8 1,354,088 - LRK53_RS05835 0.21 -0.9 1,354,088 - LRK53_RS05835 0.21 -2.7 1,354,088 - LRK53_RS05835 0.21 -1.6 1,354,088 - LRK53_RS05835 0.21 +0.9 1,354,088 - LRK53_RS05835 0.21 -1.4 1,354,088 - LRK53_RS05835 0.21 +0.7 1,354,088 - LRK53_RS05835 0.21 -0.7 1,354,088 - LRK53_RS05835 0.21 -1.6 1,354,088 - LRK53_RS05835 0.21 -0.4 1,354,088 - LRK53_RS05835 0.21 -2.1 1,354,088 - LRK53_RS05835 0.21 -3.5 1,354,088 - LRK53_RS05835 0.21 -2.5 1,354,088 - LRK53_RS05835 0.21 -2.6
Or see this region's nucleotide sequence