Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05420

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05415 and LRK53_RS05420 are separated by 114 nucleotidesLRK53_RS05420 and LRK53_RS05425 are separated by 186 nucleotidesLRK53_RS05425 and LRK53_RS05430 overlap by 1 nucleotides LRK53_RS05415: LRK53_RS05415 - IS110 family transposase, at 1,263,420 to 1,264,442 _RS05415 LRK53_RS05420: LRK53_RS05420 - muramoyltetrapeptide carboxypeptidase, at 1,264,557 to 1,265,501 _RS05420 LRK53_RS05425: LRK53_RS05425 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,265,688 to 1,266,149 _RS05425 LRK53_RS05430: LRK53_RS05430 - transcription antitermination factor NusB, at 1,266,149 to 1,266,595 _RS05430 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -2 -1 0 1at 1264.458 kb on + strandat 1264.458 kb on + strandat 1264.458 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.462 kb on + strandat 1264.508 kb on + strandat 1264.527 kb on + strandat 1264.527 kb on + strandat 1264.528 kb on - strandat 1265.640 kb on + strandat 1265.656 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,264,458 + -1.7
1,264,458 + -0.6
1,264,458 + -0.7
1,264,462 + -1.4
1,264,462 + -0.1
1,264,462 + -0.8
1,264,462 + +0.9
1,264,462 + -1.9
1,264,462 + +0.2
1,264,462 + -0.1
1,264,462 + -1.9
1,264,462 + +0.1
1,264,462 + +0.8
1,264,462 + -0.9
1,264,462 + -1.0
1,264,508 + -0.8
1,264,527 + -0.5
1,264,527 + -1.1
1,264,528 - -0.9
1,265,640 + +1.1
1,265,656 + -1.2

Or see this region's nucleotide sequence