Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05415 and LRK53_RS05420 are separated by 114 nucleotides LRK53_RS05420 and LRK53_RS05425 are separated by 186 nucleotides LRK53_RS05425 and LRK53_RS05430 overlap by 1 nucleotides
LRK53_RS05415: LRK53_RS05415 - IS110 family transposase, at 1,263,420 to 1,264,442
_RS05415
LRK53_RS05420: LRK53_RS05420 - muramoyltetrapeptide carboxypeptidase, at 1,264,557 to 1,265,501
_RS05420
LRK53_RS05425: LRK53_RS05425 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,265,688 to 1,266,149
_RS05425
LRK53_RS05430: LRK53_RS05430 - transcription antitermination factor NusB, at 1,266,149 to 1,266,595
_RS05430
Position (kb)
1264
1265
1266 Strain fitness (log2 ratio)
-2
-1
0
1 at 1264.458 kb on + strand at 1264.458 kb on + strand at 1264.458 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.462 kb on + strand at 1264.508 kb on + strand at 1264.527 kb on + strand at 1264.527 kb on + strand at 1264.528 kb on - strand at 1265.640 kb on + strand at 1265.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,264,458 + -1.7 1,264,458 + -0.6 1,264,458 + -0.7 1,264,462 + -1.4 1,264,462 + -0.1 1,264,462 + -0.8 1,264,462 + +0.9 1,264,462 + -1.9 1,264,462 + +0.2 1,264,462 + -0.1 1,264,462 + -1.9 1,264,462 + +0.1 1,264,462 + +0.8 1,264,462 + -0.9 1,264,462 + -1.0 1,264,508 + -0.8 1,264,527 + -0.5 1,264,527 + -1.1 1,264,528 - -0.9 1,265,640 + +1.1 1,265,656 + -1.2
Or see this region's nucleotide sequence