Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05145

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05135 and LRK53_RS05140 are separated by 18 nucleotidesLRK53_RS05140 and LRK53_RS05145 are separated by 13 nucleotidesLRK53_RS05145 and LRK53_RS05150 overlap by 14 nucleotidesLRK53_RS05150 and LRK53_RS05155 are separated by 8 nucleotides LRK53_RS05135: LRK53_RS05135 - tol-pal system-associated acyl-CoA thioesterase, at 1,208,704 to 1,209,141 _RS05135 LRK53_RS05140: LRK53_RS05140 - protein TolQ, at 1,209,160 to 1,209,846 _RS05140 LRK53_RS05145: LRK53_RS05145 - protein TolR, at 1,209,860 to 1,210,324 _RS05145 LRK53_RS05150: LRK53_RS05150 - cell envelope integrity protein TolA, at 1,210,311 to 1,211,255 _RS05150 LRK53_RS05155: LRK53_RS05155 - Tol-Pal system beta propeller repeat protein TolB, at 1,211,264 to 1,212,586 _RS05155 Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -2 -1 0 1at 1208.985 kb on + strand, within LRK53_RS05135at 1208.986 kb on - strand, within LRK53_RS05135at 1208.986 kb on - strand, within LRK53_RS05135at 1209.006 kb on + strand, within LRK53_RS05135at 1209.139 kb on + strandat 1210.345 kb on + strandat 1210.345 kb on + strandat 1210.346 kb on - strandat 1210.346 kb on - strandat 1210.346 kb on - strandat 1210.346 kb on - strandat 1210.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,208,985 + LRK53_RS05135 0.64 -1.6
1,208,986 - LRK53_RS05135 0.64 -1.0
1,208,986 - LRK53_RS05135 0.64 -0.8
1,209,006 + LRK53_RS05135 0.69 +0.1
1,209,139 + -0.7
1,210,345 + -0.4
1,210,345 + -1.8
1,210,346 - -0.3
1,210,346 - -1.5
1,210,346 - -2.2
1,210,346 - +0.3
1,210,346 - -2.5

Or see this region's nucleotide sequence