Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04575

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04565 and LRK53_RS04570 are separated by 74 nucleotidesLRK53_RS04570 and LRK53_RS04575 are separated by 17 nucleotidesLRK53_RS04575 and LRK53_RS04580 overlap by 4 nucleotidesLRK53_RS04580 and LRK53_RS04585 are separated by 130 nucleotides LRK53_RS04565: LRK53_RS04565 - hypothetical protein, at 1,062,366 to 1,063,274 _RS04565 LRK53_RS04570: LRK53_RS04570 - DUF4097 family beta strand repeat-containing protein, at 1,063,349 to 1,064,251 _RS04570 LRK53_RS04575: LRK53_RS04575 - hypothetical protein, at 1,064,269 to 1,064,727 _RS04575 LRK53_RS04580: LRK53_RS04580 - sigma-70 family RNA polymerase sigma factor, at 1,064,724 to 1,065,269 _RS04580 LRK53_RS04585: LRK53_RS04585 - phosphoenolpyruvate carboxykinase (GTP), at 1,065,400 to 1,067,184 _RS04585 Position (kb) 1064 1065Strain fitness (log2 ratio) -3 -2 -1 0 1at 1065.031 kb on + strand, within LRK53_RS04580at 1065.185 kb on - strand, within LRK53_RS04580at 1065.515 kb on + strandat 1065.515 kb on + strandat 1065.515 kb on + strandat 1065.516 kb on - strandat 1065.516 kb on - strandat 1065.516 kb on - strandat 1065.516 kb on - strandat 1065.516 kb on - strandat 1065.516 kb on - strandat 1065.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,065,031 + LRK53_RS04580 0.56 -2.2
1,065,185 - LRK53_RS04580 0.84 -0.0
1,065,515 + -0.8
1,065,515 + -1.8
1,065,515 + -1.1
1,065,516 - -0.8
1,065,516 - -3.1
1,065,516 - +1.4
1,065,516 - -1.4
1,065,516 - -0.9
1,065,516 - -2.3
1,065,516 - -1.0

Or see this region's nucleotide sequence